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Table 1 Selected bacterial taxa of public health importance, potential symbionts, and other prevalent OTUs detected in individual and pooled chiggers in comparison to soils and background controls

From: Ecological and microbiological diversity of chigger mites, including vectors of scrub typhus, on small mammals across stratified habitats in Thailand

Bacterial taxa (OTU identifier)

Maximum OTU Proportion (%)

Individual chigger

Pooled chigger

Soil

Control

Positive samples (%)

Positive samples(%)

Positive samples (%)

Positive samples (%)

Opportunistic/Potential pathogens

Bacillus cereus (4463224)

1.63P

4(3.67)

31(47.69)

11(61.11)

Borrelia (New.ReferenceOTU7)

34.82P

1(0.92)

32(49.23)

Campylobacter (New.CleanUp.ReferenceOTU30)

1.49P

3(4.62)

Clostridium (New.ReferenceOTU2470)

3.43P

6(9.23)

Corynebacterium (13485)

16.36P

7(6.42)

65(100)

2(13.33)

Fusobacterium (2438396)

2.44P

1(0.92)

6(9.23)

Haemophilus parainfluenzae (4473129)

1.83I

8(7.34)

17(26.15)

1(6.67)

Moraxella (1127280)

1.63P

4(6.15)

Mycobacterium (4448095)

5.22P

13(11.93)

48(73.85)

18(100)

Nocardia (102163)

17.41P

5(4.58)

35(53.84)

1(5.55)

Orientia tsutsugamushi (301131)

19.57I

3(2.75)

13(20)

Staphylococcus (4446058)

55.99I

67(61.47)

65(100)

3(16.66)

6(40)

Potential arthropod symbionts

Candidatus Cardinium (New.ReferenceOTU10)

19.06P

2(1.83)

18(27.69)

Neisseriaceae (933546)

92.48P

18(16.51)

62(95.38)

5(27.78)

4(26.67)

Rickettsiella (8028)

1.12P

2(1.83)

12(18.46)

Wolbachia (New.ReferenceOTU2936)

2.32P

2(3.08)

Other prevalent OTUs

Acinetobacter rhizosphaerae (4334053)

6.13P

4(3.67)

33(50.77)

Brevibacillus (3307468)

60.37I

61(55.96)

Burkholderia bryophila (4320353)

1.27I

38(34.86)

2(3.07)

Geobacillus (New.ReferenceOTU5884)

10.73I

82(75.23)

Nevskia (516554)

2.06I

27(24.77)

3(4.61)

7(38.88)

Sphingobacterium multivorum (4423201)

1.16I

44(40.36)

15(23.07)

1(6.67)

Sphingobium (4393057)

14.69I

82(75.23)

11(16.92)

1(5.55)

Streptomyces (821185)

59.26I

2(1.83)

13(20)

1(5.55)

Methylobacterium adhaesivum (4303249)

3.96I

11(10.09)

12(18.46)

  1. Only the OTUs with ≥5 reads were included. Superscript “I” or “P” indicate maximum OTU proportion values from individual or pooled chiggers, respectively. For source data and representative sequences, see Additional file 3