TY - JOUR AU - Stewart, F. J. AU - Newton, I. L. G. AU - Cavanaugh, C. PY - 2005 DA - 2005// TI - Chemosynthetic endosymbioses: adaptations to oxic-anoxic interfaces JO - Trends Microbiol VL - 13 UR - https://doi.org/10.1016/j.tim.2005.07.007 DO - 10.1016/j.tim.2005.07.007 ID - Stewart2005 ER - TY - CHAP AU - Cavanaugh, C. AU - McKiness, Z. P. AU - Newton, I. L. G. AU - Stewart, F. ED - Dworkin, M. ED - Falkow, S. I. ED - Rosenberg, E. ED - Schleifer, K. -. H. ED - Stackebrandt, E. PY - 2006 DA - 2006// TI - Marine chemosynthetic symbioses BT - The prokaryotes PB - Springer CY - New York UR - https://doi.org/10.1007/0-387-30741-9_18 DO - 10.1007/0-387-30741-9_18 ID - Cavanaugh2006 ER - TY - JOUR AU - Dubilier, N. AU - Bergin, C. AU - Lott, C. PY - 2008 DA - 2008// TI - Symbiotic diversity in marine animals: the art of harnessing chemosynthesis JO - Nat Rev Microbiol VL - 6 UR - https://doi.org/10.1038/nrmicro1992 DO - 10.1038/nrmicro1992 ID - Dubilier2008 ER - TY - JOUR AU - Moya, A. AU - Pereto, J. AU - Gil, R. AU - Latorre, A. PY - 2008 DA - 2008// TI - Learning to live together: genomic insights into prokaryote-animal symbioses JO - Nat Rev Genet VL - 9 UR - https://doi.org/10.1038/nrg2319 DO - 10.1038/nrg2319 ID - Moya2008 ER - TY - JOUR AU - Passos, F. D. AU - Meserani, G. L. C. PY - 2007 DA - 2007// TI - Gros O. structural and ultrastructural analysis of the gills in the bacterial-bearing species Thyasira falklandica (Bivalvia, Mollusca) JO - Zoomorphology. VL - 126 UR - https://doi.org/10.1007/s00435-007-0034-4 DO - 10.1007/s00435-007-0034-4 ID - Passos2007 ER - TY - JOUR AU - Roeselers, G. AU - Newton, I. L. G. PY - 2012 DA - 2012// TI - On the evolutionary ecology of symbioses between chemosynthetic bacteria and bivalves JO - Appl Environ Microb VL - 94 ID - Roeselers2012 ER - TY - JOUR AU - Gündüz, E. A. AU - Douglas, A. PY - 2009 DA - 2009// TI - Symbiotic bacteria enable insect to use a nutritionally inadequate diet JO - P Roy Soc B-Biol Sci VL - 276 UR - https://doi.org/10.1098/rspb.2008.1476 DO - 10.1098/rspb.2008.1476 ID - Gündüz2009 ER - TY - JOUR AU - Stanley, S. M. PY - 2014 DA - 2014// TI - Evolutionary radiation of shallow-water Lucinidae (Bivalvia with endosymbionts) as a result of the rise of seagrasses and mangroves JO - Geology. VL - 42 UR - https://doi.org/10.1130/G35942.1 DO - 10.1130/G35942.1 ID - Stanley2014 ER - TY - JOUR AU - Bennett, G. M. AU - Moran, N. A. PY - 2015 DA - 2015// TI - Heritable symbiosis: the advantages and perils of an evolutionary rabbit hole JO - P Natl Acad Sci USA VL - 112 UR - https://doi.org/10.1073/pnas.1421388112 DO - 10.1073/pnas.1421388112 ID - Bennett2015 ER - TY - JOUR AU - Felbeck, H. AU - Jarchow, J. PY - 1998 DA - 1998// TI - Carbon release from purified chemoautotrophic bacterial symbionts of the hydrothermal vent tubeworm Riftia pachyptila JO - Physiol Zool VL - 71 UR - https://doi.org/10.1086/515931 DO - 10.1086/515931 ID - Felbeck1998 ER - TY - JOUR AU - Bright, M. AU - Keckeis, H. AU - Fisher, C. R. PY - 2000 DA - 2000// TI - An autoradiographic examination of carbon fixation, transfer and utilization in the Riftia pachyptila symbiosis JO - Mar Biol VL - 136 UR - https://doi.org/10.1007/s002270050722 DO - 10.1007/s002270050722 ID - Bright2000 ER - TY - JOUR AU - Waite, T. J. AU - Moore, T. S. AU - Childress, J. J. AU - Hsu-Kim, H. AU - Mullaugh, K. M. AU - Nuzzio, D. B. PY - 2008 DA - 2008// TI - Variation in sulfur speciation with shellfish presence at a Lau Basin diffuse flow vent site JO - J Shellfish Res VL - 27 UR - https://doi.org/10.2983/0730-8000(2008)27[163:VISSWS]2.0.CO;2 DO - 10.2983/0730-8000(2008)27[163:VISSWS]2.0.CO;2 ID - Waite2008 ER - TY - JOUR AU - Podowski, E. L. AU - Ma, S. AU - Luther, G. W. AU - Wardrop, D. AU - Fisher, C. R. PY - 2010 DA - 2010// TI - Biotic and abiotic factors affecting distributions of megafauna in diffuse flow on andesite and basalt along the eastern Lau spreading center, Tonga JO - Mar Ecol Prog Ser VL - 418 UR - https://doi.org/10.3354/meps08797 DO - 10.3354/meps08797 ID - Podowski2010 ER - TY - JOUR AU - Liao, L. AU - Wankel, S. D. AU - Wu, M. AU - Cavanaugh, C. M. AU - Girguis, P. R. PY - 2014 DA - 2014// TI - Characterizing the plasticity of nitrogen metabolism by the host and symbionts of the hydrothermal vent chemoautotrophic symbioses Ridgeia piscesae JO - Mol Ecol VL - 23 UR - https://doi.org/10.1111/mec.12460 DO - 10.1111/mec.12460 ID - Liao2014 ER - TY - JOUR AU - Newton, I. L. G. AU - Woyke, T. AU - Auchtung, T. A. AU - Dilly, G. F. AU - Dutton, R. J. AU - Fisher, M. C. PY - 2007 DA - 2007// TI - The Calyptogena magnifica chemoautotrophic symbiont genome JO - Science. VL - 315 UR - https://doi.org/10.1126/science.1138438 DO - 10.1126/science.1138438 ID - Newton2007 ER - TY - JOUR AU - Robidart, J. C. AU - Bench, S. AU - Feldman, R. A. AU - Novoradovsky, A. AU - Podell, S. B. AU - Gaasterland, T. PY - 2008 DA - 2008// TI - Metabolic versatility of the Riftia pachyptila endosymbiont revealed through metagenomics JO - Environ Microbiol VL - 10 UR - https://doi.org/10.1111/j.1462-2920.2007.01496.x DO - 10.1111/j.1462-2920.2007.01496.x ID - Robidart2008 ER - TY - JOUR AU - Dmytrenko, O. AU - Russell, S. AU - Loo, W. T. AU - Fontanez, K. M. AU - Liao, L. AU - Roeselers, G. PY - 2014 DA - 2014// TI - The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis JO - BMC Genomics VL - 15 UR - https://doi.org/10.1186/1471-2164-15-924 DO - 10.1186/1471-2164-15-924 ID - Dmytrenko2014 ER - TY - JOUR AU - König, S. AU - Gros, O. AU - Heiden, S. E. AU - Hinzke, T. AU - Thuermer, A. AU - Poehlein, A. PY - 2017 DA - 2017// TI - Nitrogen fixation in a chemoautotrophic lucinid symbiosis JO - Nat Microbiol VL - 2 UR - https://doi.org/10.1038/nmicrobiol.2016.193 DO - 10.1038/nmicrobiol.2016.193 ID - König2017 ER - TY - JOUR AU - Taylor, J. D. AU - Williams, S. T. AU - Glover, E. A. PY - 2007 DA - 2007// TI - Evolutionary relationships of the bivalve family Thyasiridae (Mollusca: Bivalvia), monophyly and superfamily status JO - J Mar Biol Assoc UK VL - 87 UR - https://doi.org/10.1017/S0025315407054409 DO - 10.1017/S0025315407054409 ID - Taylor2007 ER - TY - JOUR AU - Batstone, R. T. AU - Laurich, J. R. AU - Salvo, F. AU - Dufour, S. C. PY - 2014 DA - 2014// TI - Divergent chemosymbiosis-related characters in Thyasira cf. gouldi (Bivalvia: Thyasiridae) JO - PLOS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0092856 DO - 10.1371/journal.pone.0092856 ID - Batstone2014 ER - TY - JOUR AU - Dufour, S. C. PY - 2005 DA - 2005// TI - Gill anatomy and the evolution of symbiosis in the bivalve family Thyasiridae JO - Biol Bull VL - 208 UR - https://doi.org/10.2307/3593152 DO - 10.2307/3593152 ID - Dufour2005 ER - TY - STD TI - Taylor JD, Glover EA. Chemosymbiotic Bivalves. In: Kiel S, editor. The Vent and Seep Biota. Topics and Geobiology. 33: Springer Science+Business Media B.V.; 2010. pp. 107–135. ID - ref22 ER - TY - JOUR AU - Rodrigues, C. F. AU - Duperron, S. PY - 2011 DA - 2011// TI - Distinct symbiont lineages in three thyasirid species (Bivalvia: Thyasiridae) from the eastern Atlantic and Mediterranean Sea JO - Naturwissenschaften. VL - 98 UR - https://doi.org/10.1007/s00114-011-0766-3 DO - 10.1007/s00114-011-0766-3 ID - Rodrigues2011 ER - TY - JOUR AU - Dufour, S. C. AU - Felbeck, H. PY - 2006 DA - 2006// TI - Symbiont abundance in thyasirids (Bivalvia) is related to particulate food and sulphide availability JO - Mar Ecol Prog Ser VL - 320 UR - https://doi.org/10.3354/meps320185 DO - 10.3354/meps320185 ID - Dufour2006 ER - TY - JOUR AU - Dando, P. R. AU - Spiro, B. PY - 1993 DA - 1993// TI - Varying nutritional dependence of the thyasirid bivalves Thyasira sarsi and T. equalis on chemoautotrophic symbiotic bacteria, demonstrated by isotope ratios of tissue carbon and shell carbonate JO - Mar Ecol Prog Ser VL - 92 UR - https://doi.org/10.3354/meps092151 DO - 10.3354/meps092151 ID - Dando1993 ER - TY - JOUR AU - Fujiwara, Y. AU - Kato, C. AU - Masui, N. AU - Fujikura, K. AU - Kojima, S. PY - 2001 DA - 2001// TI - Dual symbiosis in the cold-seep thyasirid clam Maorithyas hadalis from the hadal zone in the Japan trench, western Pacific JO - Mar Ecol Prog Ser VL - 214 UR - https://doi.org/10.3354/meps214151 DO - 10.3354/meps214151 ID - Fujiwara2001 ER - TY - JOUR AU - Batstone, R. T. AU - Dufour, S. C. PY - 2016 DA - 2016// TI - Closely related thyasirid bivalves associate with multiple symbiont phylotypes JO - Mar Ecol VL - 37 UR - https://doi.org/10.1111/maec.12310 DO - 10.1111/maec.12310 ID - Batstone2016 ER - TY - JOUR AU - McCuaig, B. AU - Liboiron, F. AU - Dufour, S. C. PY - 2017 DA - 2017// TI - The bivalve Thyasira cf gouldi hosts chemoautotrophic symbiont populations with strain level diversity JO - PeerJ VL - 5 UR - https://doi.org/10.7717/peerj.3597 DO - 10.7717/peerj.3597 ID - McCuaig2017 ER - TY - JOUR AU - Zanzerl, H. AU - Salvo, F. AU - Jones, S. W. AU - Dufour, S. C. PY - 2019 DA - 2019// TI - Feeding strategies in symbiotic and asymbiotic thyasirid bivalves JO - J Sea Res VL - 145 UR - https://doi.org/10.1016/j.seares.2018.12.005 DO - 10.1016/j.seares.2018.12.005 ID - Zanzerl2019 ER - TY - JOUR AU - Dufour, S. C. AU - Laurich, J. R. AU - Batstone, R. T. AU - McCuaig, B. AU - Elliot, A. AU - Poduska, K. M. PY - 2014 DA - 2014// TI - Magnetosome-containing bacteria living as symbionts of bivalves JO - ISME J. VL - 8 UR - https://doi.org/10.1038/ismej.2014.93 DO - 10.1038/ismej.2014.93 ID - Dufour2014 ER - TY - JOUR AU - Overbeek, R. AU - Begley, T. AU - Butler, R. M. AU - Choudhuri, J. V. AU - Chuang, H. -. Y. AU - Cohoon, M. PY - 2005 DA - 2005// TI - The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki866 DO - 10.1093/nar/gki866 ID - Overbeek2005 ER - TY - JOUR AU - Moran, N. M. AU - McCutcheon, J. P. AU - Nakabachi, A. PY - 2008 DA - 2008// TI - Genomics and evolution of heritable bacterial symbionts JO - Annu Rev Genet VL - 42 UR - https://doi.org/10.1146/annurev.genet.41.110306.130119 DO - 10.1146/annurev.genet.41.110306.130119 ID - Moran2008 ER - TY - JOUR AU - Kuwahara, H. AU - Takaki, Y. AU - Shimamura, S. AU - Yoshida, T. AU - Maeda, T. AU - Kunieda, T. PY - 2011 DA - 2011// TI - Loss of genes for DNA recombination and repair in the reductive genome evolution of thioautotrophic symbionts of Calyptogena clams JO - BMC Evol Biol VL - 11 UR - https://doi.org/10.1186/1471-2148-11-285 DO - 10.1186/1471-2148-11-285 ID - Kuwahara2011 ER - TY - JOUR AU - Ferrández, A. AU - Hawkins, A. C. AU - Summerfield, D. T. AU - Harwood, C. S. PY - 2002 DA - 2002// TI - Cluster II che genes from Pseudomonas aeruginosa are required for an optimal chemotactic response JO - J Bacteriol VL - 184 UR - https://doi.org/10.1128/JB.184.16.4374-4383.2002 DO - 10.1128/JB.184.16.4374-4383.2002 ID - Ferrández2002 ER - TY - JOUR AU - Brune, A. AU - Frenzel, P. AU - Cypionka, H. PY - 2000 DA - 2000// TI - Life at the oxic-anoxic interface: microbial activities and adaptations JO - FEMS Microbiol Rev VL - 24 UR - https://doi.org/10.1111/j.1574-6976.2000.tb00567.x DO - 10.1111/j.1574-6976.2000.tb00567.x ID - Brune2000 ER - TY - JOUR AU - Flood, B. E. AU - Jones, D. S. AU - Bailey, J. V. PY - 2015 DA - 2015// TI - Sedimenticola thiotaurini sp. nov., a sulfur-oxidizing bacterium isolated from salt marsh sediments, and emended descriptions of the genus Sedimenticola and Sedimenticola selenatireducens JO - Int J Syst Evol Micr VL - 65 UR - https://doi.org/10.1099/ijs.0.000295 DO - 10.1099/ijs.0.000295 ID - Flood2015 ER - TY - JOUR AU - Harada, M. AU - Yoshida, T. AU - Kuwahara, H. AU - Shimamura, S. AU - Takaki, Y. AU - Kato, C. PY - 2009 DA - 2009// TI - Expression of genes for sulfur oxidation in the intracellular chemoautotrophic symbiont of the deep-sea bivalve Calyptogena okutanii JO - Extremophiles. VL - 13 UR - https://doi.org/10.1007/s00792-009-0277-8 DO - 10.1007/s00792-009-0277-8 ID - Harada2009 ER - TY - JOUR AU - Roeselers, G. AU - Newton, I. L. G. AU - Woyke, T. AU - Auchtung, T. A. AU - Dilly, G. F. AU - Dutton, R. J. PY - 2010 DA - 2010// TI - Complete genome sequence of Candidatus Ruthia magnifica JO - Stand Genomic Sci VL - 3 UR - https://doi.org/10.4056/sigs.1103048 DO - 10.4056/sigs.1103048 ID - Roeselers2010 ER - TY - JOUR AU - Li, Y. AU - Liles, M. R. AU - Halanych, K. M. PY - 2018 DA - 2018// TI - Endosymbiont genomes yield clues of tubeworm success JO - ISME J VL - 12 UR - https://doi.org/10.1038/s41396-018-0220-z DO - 10.1038/s41396-018-0220-z ID - Li2018 ER - TY - JOUR AU - Friedrich, C. G. AU - Rother, D. AU - Bardischewsky, F. AU - Quentmeier, A. AU - Fischer, J. PY - 2001 DA - 2001// TI - Oxidation of reduced inorganic sulfur compounds by bacteria: emergence of a common mechanism? JO - Appl Environ Microbiol VL - 67 UR - https://doi.org/10.1128/AEM.67.7.2873-2882.2001 DO - 10.1128/AEM.67.7.2873-2882.2001 ID - Friedrich2001 ER - TY - JOUR AU - Rother, D. AU - Henrich, H. -. J. AU - Quentmeier, A. AU - Bardischewsky, F. AU - Friedrich, C. G. PY - 2001 DA - 2001// TI - Novel genes of the sox gene cluster, mutagenesis of the flavoprotein SoxF, and evidence for a general sulfur-oxidizing system in Paracoccus pantotrophus GB17 JO - J Bacteriol VL - 183 UR - https://doi.org/10.1128/JB.183.15.4499-4508.2001 DO - 10.1128/JB.183.15.4499-4508.2001 ID - Rother2001 ER - TY - JOUR AU - Sirko, A. AU - Hryniewicz, M. AU - Hulanicka, D. AU - Bock, A. PY - 1990 DA - 1990// TI - Sulfate and thiosulfate transport in Escherichia coli K-12: nucleotide sequence and expression the cysTWAM gene cluster JO - J Bacteriol VL - 172 UR - https://doi.org/10.1128/JB.172.6.3351-3357.1990 DO - 10.1128/JB.172.6.3351-3357.1990 ID - Sirko1990 ER - TY - JOUR AU - Bradley, A. S. AU - Leavitt, W. D. AU - Johnston, D. T. PY - 2011 DA - 2011// TI - Revisiting the dissimilatory sulfate reduction pathway JO - Geobiology. VL - 9 UR - https://doi.org/10.1111/j.1472-4669.2011.00292.x DO - 10.1111/j.1472-4669.2011.00292.x ID - Bradley2011 ER - TY - JOUR AU - Nakagawa, S. AU - Shimamura, S. AU - Takaki, Y. AU - Suzuki, Y. AU - Murakami, S. AU - Watanabe, T. PY - 2014 DA - 2014// TI - Allying with armored snails: the complete genome of gammaproteobacterial endosymbiont JO - ISME J VL - 8 UR - https://doi.org/10.1038/ismej.2013.131 DO - 10.1038/ismej.2013.131 ID - Nakagawa2014 ER - TY - JOUR AU - Reveillaud, J. AU - Anderson, R. AU - Reves-Sohn, S. AU - Cavanaugh, C. AU - Huber, J. A. PY - 2018 DA - 2018// TI - Metagenomic investigation of vestimentiferan tubeworm endosymbionts from mid-Cayman rise reveals new insights into metabolism and diversity JO - Microbiome. VL - 6 UR - https://doi.org/10.1186/s40168-018-0411-x DO - 10.1186/s40168-018-0411-x ID - Reveillaud2018 ER - TY - JOUR AU - Narasingarao, P. AU - Häggblom, M. M. PY - 2006 DA - 2006// TI - Sedimenticola selenatireducens, gen. Nov., sp. nov., an anaerobic selenate-respiring bacterium isolated from estuarine sediment JO - Syst Appl Microbiol VL - 29 UR - https://doi.org/10.1016/j.syapm.2005.12.011 DO - 10.1016/j.syapm.2005.12.011 ID - Narasingarao2006 ER - TY - JOUR AU - Kleiner, M. AU - Petersen, J. M. AU - Dubilier, N. PY - 2012 DA - 2012// TI - Convergent and divergent evolution of metabolism in sulfur-oxidizing symbionts and the role of horizontal gene transfer JO - Curr Opin Microbiol VL - 15 UR - https://doi.org/10.1016/j.mib.2012.09.003 DO - 10.1016/j.mib.2012.09.003 ID - Kleiner2012 ER - TY - JOUR AU - Ponnudurai, R. AU - Sayavedra, L. AU - Kleiner, M. AU - Heiden, S. E. AU - Thürmer, A. AU - Felbeck, H. PY - 2017 DA - 2017// TI - Genome sequence of the sulfur-oxidizing Bathymodiolus thermophilus gill endosymbiont JO - Stand Genomic Sci VL - 12 UR - https://doi.org/10.1186/s40793-017-0266-y DO - 10.1186/s40793-017-0266-y ID - Ponnudurai2017 ER - TY - JOUR AU - Petersen, J. M. AU - Kemper, A. AU - Gruber-Vodicka, H. AU - Cardini, U. AU - Geest, M. AU - Kleiner, M. PY - 2016 DA - 2016// TI - Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation JO - Nat Microbiol VL - 2 UR - https://doi.org/10.1038/nmicrobiol.2016.195 DO - 10.1038/nmicrobiol.2016.195 ID - Petersen2016 ER - TY - JOUR AU - Laurich, J. R. AU - Batstone, R. T. AU - Dufour, S. C. PY - 2015 DA - 2015// TI - Temporal variation in chemoautotrophic symbiont abundance in the thyasirid bivalve Thyasira cf. gouldi JO - Mar Biol VL - 162 UR - https://doi.org/10.1007/s00227-015-2727-4 DO - 10.1007/s00227-015-2727-4 ID - Laurich2015 ER - TY - JOUR AU - Blankenberg, D. AU - Kuster, G. AU - Coraor, N. AU - Ananda, G. AU - Lazarus, R. AU - Mangan, M. PY - 2010 DA - 2010// TI - Galaxy: a web-based genome analysis tool for experimentalists JO - Curr Protoc Mol Biol VL - 19 ID - Blankenberg2010 ER - TY - JOUR AU - Afgan, E. AU - Baker, D. AU - Beek, M. AU - Blankenberg, D. AU - Bouvier, D. AU - Čech, M. PY - 2016 DA - 2016// TI - The galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update JO - Nucleic Acids Res VL - 44 UR - https://doi.org/10.1093/nar/gkw343 DO - 10.1093/nar/gkw343 ID - Afgan2016 ER - TY - JOUR AU - Huson, D. H. AU - Auch, A. F. AU - Qi, J. AU - Schuster, S. C. PY - 2007 DA - 2007// TI - MEGAN analysis of metagenomic data JO - Genome Res VL - 17 UR - https://doi.org/10.1101/gr.5969107 DO - 10.1101/gr.5969107 ID - Huson2007 ER - TY - JOUR AU - Bankevich, A. AU - Nurk, S. AU - Antipov, D. AU - Gurevich, A. A. AU - Dvorkin, M. AU - Kulikov, A. S. PY - 2012 DA - 2012// TI - SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing JO - J Bacteriol VL - 19 ID - Bankevich2012 ER - TY - JOUR AU - Meyer, F. AU - Paarmann, D. AU - D'Souza, M. AU - Olson, R. AU - Glass, E. M. AU - Kubal, M. PY - 2008 DA - 2008// TI - The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes JO - BMC Bioinformatics VL - 9 UR - https://doi.org/10.1186/1471-2105-9-386 DO - 10.1186/1471-2105-9-386 ID - Meyer2008 ER - TY - JOUR AU - Seemann, T. PY - 2014 DA - 2014// TI - Prokka: rapid prokaryotic genome annotation JO - Bioinformatics. VL - 30 UR - https://doi.org/10.1093/bioinformatics/btu153 DO - 10.1093/bioinformatics/btu153 ID - Seemann2014 ER - TY - STD TI - Li H. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv e-prints. 2013; arXiv:1303.3997. (pre-print). ID - ref57 ER - TY - JOUR AU - Li, H. AU - Handsaker, B. AU - Wysoker, A. AU - Fennell, T. AU - Ruan, J. AU - Homer, N. AU - Marth, G. AU - Abecasis, G. PY - 2009 DA - 2009// TI - Durbin R and 1000 genome project data processing subgroup. The sequence alignment/map format and SAMtools JO - Bioinformatics. VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp352 DO - 10.1093/bioinformatics/btp352 ID - Li2009 ER - TY - BOOK AU - Pagès, H. AU - Aboyoun, P. AU - Gentleman, R. AU - DebRoy, S. PY - 2019 DA - 2019// TI - Biostrings: Efficient manipulation of biological strings. R package version 2.52.0 ID - Pagès2019 ER - TY - JOUR AU - Tang, Y. AU - Horikoshi, M. AU - Li, W. PY - 2016 DA - 2016// TI - Ggfortify: unified interface to visualize statistical results of popular R packages JO - R J VL - 8 UR - https://doi.org/10.32614/RJ-2016-060 DO - 10.32614/RJ-2016-060 ID - Tang2016 ER -