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Table 4 Adonis2 and linear mixed model statistics of experimental and temporal effects on phylogenetic beta diversity

From: Microbial environment shapes immune function and cloacal microbiota dynamics in zebra finches Taeniopygia guttata

Phylogenetic beta diversity

Adonis(2)a

R2 (%)

df

Pseudo-F

P

Experimental treatment

1.86

1

3.87

0.01

Sampling moment

26.87

3

19.73

< 0.001

interaction

2.21

3

1.64

0.08

Within-individual weighted UniFrac distance (yt-yt-1)

ANOVA

 

df

F

P

Experimental treatment

 

1, 95

3.51

0.06

Sampling interval

 

2, 95

17.05

< 0.001

interaction

 

2, 95

5.28

< 0.01

Contrasts (sampling interval)

effect

Df

χ2

FDR q

High - Low diversity (1–2)

−0.02

1

0.14

0.87

High - Low diversity (2–3)

0.17

1

13.21

< 0.001

High - Low diversity (3–4)

− 0.01

1

0.03

0.87

  1. aGroup dispersions are shown in Additional file 1: Fig. 8