Table 2 Relative abundances of genera, grouped by phylum, differentially represented between farms (PFDR < 0.05)
Genus | Mean relative abundance in farm A (%) (SD) | Mean relative abundance in farm B (%) (SD) | Estimated difference farm A - farm B ± SE |
|---|---|---|---|
Actinobacteria | |||
Adlercreutzia | 0.89 (0.47) | 1.14 (0.23) | −0.19 ± 0.06 |
Bacteroidetes | |||
Bacteroides | 1.88 (0.67) | 0.80 (0.35) | 1.10 ± 0.08 |
Butyricimonas | 0.16 (0.19) | 0.35 (0.17) | −0.19 ± 0.02 |
Odoribacter | 0.23 (0.21) | 0.44 (0.20) | −0.21 ± 0.03 |
Parabacteroides | 0.25 (0.18) | 0.07 (0.07) | 0.18 ± 0.02 |
Rikenella | 0.39 (0.24) | 0.18 (0.13) | 0.25 ± 0.03 |
Euryarchaeota | |||
Methanobrevibacter | 0.13 (0.19) | 0.44 (0.17) | −0.28 ± 0.02 |
Firmicutes | |||
Anaerofustis | 0.12 (0.08) | 0.08 (0.04) | 0.03 ± 0.01 |
Anaerostipes | 0.17 (0.08) | 0.12 (0.04) | 0.06 ± 0.01 |
Blautia | 2.86 (0.67) | 3.22 (0.46) | −0.36 ± 0.08 |
Butyrivibrio | 0.10 (0.07) | 0.13 (0.06) | −0.03 ± 0.01 |
Clostridium | 1.09 (0.26) | 0.87 (0.13) | 0.21 ± 0.03 |
Coprobacillus | 0.20 (0.27) | 0.14 (0.08) | 0.08 ± 0.03 |
Coprococcus | 1.96 (0.42) | 2.26 (0.29) | −0.28 ± 0.05 |
Dehalobacterium | 0.05 (0.08) | 0.18 (0.03) | −0.13 ± 0.01 |
Dorea | 0.46 (0.12) | 0.51 (0.09) | −0.05 ± 0.02 |
Epulopiscium | 0.14 (0.11) | 0.00 (0.00) | 0.15 ± 0.01 |
Oscillospira | 2.11 (0.53) | 2.85 (0.31) | −0.79 ± 0.07 |
p-75-a5 | 0.13 (0.06) | 0.00 (0.00) | 0.13 ± 0.01 |
Phascolarctobacterium | 0.27 (0.24) | 0.00 (0.00) | 0.26 ± 0.03 |
rc4–4 | 0.13 (0.06) | 0.23 (0.03) | −0.10 ± 0.01 |
Proteobacteria | |||
Campylobacter | 0.08 (0.08) | 0.00 (0.00) | 0.08 ± 0.01 |
Desulfovibrio | 0.58 (0.22) | 0.00 (0.00) | 0.57 ± 0.03 |
Oxalabacter | 0.10 (0.06) | 0.13 (0.03) | −0.03 ± 0.01 |
Tenericutes | |||
Anaeroplasma | 0.23 (0.18) | 0.10 (0.09) | 0.12 ± 0.02 |
Verrucomicrobia | |||
Akkermansia | 1.62 (0.45) | 0.91 (0.23) | 0.68 ± 0.05 |