Table 4 Significantly enriched taxa at the family, genus and species level found in DCM foals from ages 1 to 6 weeks (p < 0.05, Kruskal-Wallis, LDA score > 2.0) compared with all other weeks
From: Development of the equine hindgut microbiome in semi-feral and domestic conventionally-managed foals
| Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | ||
|---|---|---|---|---|---|---|---|
| Firmicutes | Butyricicoccus spp. | Blautia producta | Lactobacillus reuteri | Selenomonas ruminantium | Mogibacteriaceae gen. | Veillonellaceae gen. | Sarcina spp. |
| Butyricicoccus pullicaecorum | Ruminococcus spp. | Peptococcaeae gen. | Selenomonas gen. | Ruminococcus flavefaciens | Peptococcus spp. | Peptoniphilus spp. | |
| Clostridium perfringens | Eubacterium spp. | Holdemania spp. | Lactobacillus spp. | Ruminococcus spp. | Coprobacillus spp. 2 | Rummeliibacillus spp. | |
| Clostridium spp. | Eubacterium dolichum | Anaerotruncus spp. | Coprococcus spp. | RFN20 spp. | Mogibacteriaceae gen. | Pseudobutyrivibrio spp. | |
| Peptostreptococcaceae gen. | Oscillospira spp. | rc4_4 spp. | Clostridium spp. | Mogibacterium spp. | |||
| Turicibacter spp. | Peptococcaceae gen. | Phascolarctobacterium spp. | Mogibacteriaceae gen. | ||||
| Enterococcaceae gen. | Blautia spp. | Roseburia spp. | Leuconostocaceae gen. | ||||
| Enterococcus spp. | Lachnospiraceae gen. | Finegoldia spp. | |||||
| Enterococcus casseliflavus | Lactobacillus spp. | Tissierellaceae gen. | |||||
| Vagococcus spp. | Lactobacillaceae gen. | ||||||
| Blautia spp. | Dorea spp. | ||||||
| Bacteroidetes | Bacteroides ovatus | Butyricimonas spp. | 5_7N15 spp. | Bacteroides plebeius | RF16 gen. | ||
| Odoribacteraceae gen. | Prevotellaceae gen. | CF231 spp. | YRC22 spp. | ||||
| Porphyromonadaceae gen. | BF311 spp. | Prevotella copri | Prevotella spp. | ||||
| Paludibacter spp. | Prevotella spp. | Paraprevotellaceae gen. | |||||
| Paraprevotellaceae gen. | Prevotallaceae gen. | ||||||
| BS11 gen. | |||||||
| Proteobacteria | Enterobacteriaceae gen. | Escherichia spp. | Actinobacillus spp. | Oxalobacteraceae gen. | |||
| Erwinia dispersa | Escherichia coli | Pasteurellaceae gen. | |||||
| Erwinia spp. | Sphingomonas spp. | ||||||
| Citrobacter spp. | Morganella spp. | ||||||
| Proteus spp. | Klebsiella spp. | ||||||
| Actinobacteria | Eggerthella spp. | Actinomyces spp. 2 | Actinomycetaceae gen. | Corynebacterium spp. | |||
| Eggerthella lenta | Corynebacteriaceae gen. | ||||||
| Verrucomicrobia | Akkermansia muciniphila | Akkermansia spp. | R4_41B gen. | ||||
| RFP12 gen. | |||||||
| Euryarchaeota | Dehalobacteriaceae gen. | Methanimicrococcus spp. | |||||
| Methanobrevibacter spp. | Methanosarcinaceae gen. | ||||||
| Methanobacteriaceae gen. | Methanomassiliicoccaceae gen. | ||||||
| vadinCA11 spp. | |||||||
| Methanocorpusculaceae gen. | |||||||
| Methanocorpusculum spp. | |||||||
| Spirochaetes | Treponema spp. | Spirochaetaceae gen. | |||||
| Chlamydiae | Chlamydia spp. | ||||||
| Planctomycetes | Pirellulaceae gen. | ||||||
| Synergistetes | Synergistaceae gen. | ||||||
| Cyanobacteria | Synechococcaceae gen. | ||||||
| Synechococcus spp. | |||||||