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Table 1 Permutational analysis of variance describing the effects of early-in-life rumen microbial inoculation and time on the rumen community structure

From: Inoculation with rumen fluid in early life accelerates the rumen microbial development and favours the weaning process in goats

Community1

Inoculation

Time

Interaction

Multi-kingdom

 Variance (%)

21.8

16.2

9.90

 Pseudo-F

12.3

13.7

2.79

P-value

< 0.001

< 0.001

< 0.001

Bacteria

 Variance (%)

16.1

17.3

9.26

 Pseudo-F

8.20

13.21

2.36

P-value

< 0.001

< 0.001

< 0.001

Methanogens

 Variance (%)

24.9

11.5

9.07

 Pseudo-F

12.5

8.70

2.28

P-value

< 0.001

< 0.001

0.002

Protozoa

 Variance (%)

14.5

9.07

6.28

 Pseudo-F

6.79

4.23

1.47

P-value

< 0.001

< 0.001

0.096

Anaerobic fungi

 Variance (%)

30.4

1.73

4.41

 Pseudo-F

8.45

1.44

1.23

P-value

< 0.001

0.192

0.193

  1. 1Microbial data were log10 transformed and only Spearman’s correlations coefficients ρ > 0.3 (green) or ρ < −0.3 (red) and p < 0.01 are shown (N = 96). Parameters: milk, concentrate, forage and DM intake (g/d), rumen pH,total volatile fatty acids (mM), acetate (%), propionate, butyrate (%), odd and branched chain fatty acids (%), microbial concentration (log10 copies/mg DM), OTUs richness (−R), plasma β-hydroxybutyrate (mM), blood glucose (mg/dL), average daily gain (g/d) and ADG during the post weaning period (ADG-pw)