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Table 1 Mean differences of taxa absolute abundance between groups (natural log scale) and standard errors (SEs). The analysis is based on the “Analysis of Compositions of Microbiomes with Bias Correction” (ANCOM-BC). Only taxa with significantly different abundance between diets are shown (adjusted p-value < 0.05, Bonferroni correction)

From: Sustainable plant-based diets promote rainbow trout gut microbiota richness and do not alter resistance to bacterial infection

Phylum Class Order Family Genus Species Mean difference SE q-value
Tv vs T0
 Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus hamsteri 5.71 1.24 0.0002
 Firmicutes Bacilli Lactobacillales Leuconostocaceae Lactobacillus paraplantarum 5.49 1.24 0.0005
 Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus agalactiae 4.69 1.25 0.0104
 Firmicutes Bacilli Lactobacillales Leuconostocaceae    5.01 0.94 4.78e-06
 Firmicutes Bacilli Lactobacillales Leuconostocaceae Pediococcus   6.09 1.27 8.94e-05
Tv vs F1
 Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus   −3.78 0.94 0.0036
 Firmicutes Bacilli Bacillales Bacillaceae    −3.06 0.76 0.0032
 Firmicutes Bacilli Lactobacillales Leuconostocaceae Weissella hellenica −7.49 1.02 1.53e-11
 Actinobacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium aurimucosum −5.76 0.95 6.15e-07
 Actinobacteria Actinobacteria Actinomycetales     −3.90 0.60 6.33e-09
Tv vs F2
 Firmicutes Bacilli Bacillales Bacillaceae    −3.14 0.74 0.0013
 Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus   −3.65 0.94 0.0057
 Firmicutes Bacilli Lactobacillales     −1.95 0.51 0.0068
 Actinobacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium aurimucosum −5.72 0.99 6.15e-07
 Actinobacteria Actinobacteria Actinomycetales Corynebacteriaceae Corynebacterium   −5.32 0.78 6.21e-10
 Actinobacteria Actinobacteria Actinomycetales    −3.95 0.65 8.02e-08
F1 vs F2
 Firmicutes Bacilli Lactobacillales Leuconostocaceae Weissella hellenica −5.72 0.83 5.74e-10
 Actinobacteria Actinobacteria Actinomycetales Streptomycetaceae    0.95 0.27 0.0382
 Tenericutes Mollicutes RsaHF231     1.48 0.36 0.0030
 Firmicutes Bacilli Lactobacillales     1.47 0.30 0.0001
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Animal Microbiome

ISSN: 2524-4671