Sustainable plant-based diets promote rainbow trout gut microbiota richness and do not alter resistance to bacterial infection

Pérez-Pascual, David; Pérez-Cobas, Ana Elena; Rigaudeau, Dimitri; Rochat, Tatiana; Bernardet, Jean-François; Skiba-Cassy, Sandrine; Marchand, Yann; Duchaud, Eric; Ghigo, Jean-Marc

doi:10.1186/s42523-021-00107-2

Animal Microbiome

Table 1 Mean differences of taxa absolute abundance between groups (natural log scale) and standard errors (SEs). The analysis is based on the “Analysis of Compositions of Microbiomes with Bias Correction” (ANCOM-BC). Only taxa with significantly different abundance between diets are shown (adjusted p-value < 0.05, Bonferroni correction)

From: Sustainable plant-based diets promote rainbow trout gut microbiota richness and do not alter resistance to bacterial infection

Phylum	Class	Order	Family	Genus	Species	Mean difference	SE	q-value
Tv vs T₀
Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	hamsteri	5.71	1.24	0.0002
Firmicutes	Bacilli	Lactobacillales	Leuconostocaceae	Lactobacillus	paraplantarum	5.49	1.24	0.0005
Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	agalactiae	4.69	1.25	0.0104
Firmicutes	Bacilli	Lactobacillales	Leuconostocaceae			5.01	0.94	4.78e-06
Firmicutes	Bacilli	Lactobacillales	Leuconostocaceae	Pediococcus		6.09	1.27	8.94e-05
Tv vs F1
Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus		−3.78	0.94	0.0036
Firmicutes	Bacilli	Bacillales	Bacillaceae			−3.06	0.76	0.0032
Firmicutes	Bacilli	Lactobacillales	Leuconostocaceae	Weissella	hellenica	−7.49	1.02	1.53e-11
Actinobacteria	Actinobacteria	Actinomycetales	Corynebacteriaceae	Corynebacterium	aurimucosum	−5.76	0.95	6.15e-07
Actinobacteria	Actinobacteria	Actinomycetales				−3.90	0.60	6.33e-09
Tv vs F2
Firmicutes	Bacilli	Bacillales	Bacillaceae			−3.14	0.74	0.0013
Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus		−3.65	0.94	0.0057
Firmicutes	Bacilli	Lactobacillales				−1.95	0.51	0.0068
Actinobacteria	Actinobacteria	Actinomycetales	Corynebacteriaceae	Corynebacterium	aurimucosum	−5.72	0.99	6.15e-07
Actinobacteria	Actinobacteria	Actinomycetales	Corynebacteriaceae	Corynebacterium		−5.32	0.78	6.21e-10
Actinobacteria	Actinobacteria	Actinomycetales				−3.95	0.65	8.02e-08
F1 vs F2
Firmicutes	Bacilli	Lactobacillales	Leuconostocaceae	Weissella	hellenica	−5.72	0.83	5.74e-10
Actinobacteria	Actinobacteria	Actinomycetales	Streptomycetaceae			0.95	0.27	0.0382
Tenericutes	Mollicutes	RsaHF231				1.48	0.36	0.0030
Firmicutes	Bacilli	Lactobacillales				1.47	0.30	0.0001

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ISSN: 2524-4671

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