Table 2 Significantly different MAGs in Big and Small broilers
From: The link between broiler flock heterogeneity and cecal microbiome composition
| MAG | Phylum | Family | Genus | log2FC | Adjusted p-value | Avg Small (%) | Avg Big (%) | |
|---|---|---|---|---|---|---|---|---|
| Highest abundance in Small chicken | HQ/98/3-BC04_bin.5 | Firmicutes | Ruminococcaceae | Gemmiger | −5.19 | 0.006 | 6.19 | 0.17 |
| HQ/94/0-BC04_bin.119 | Firmicutes | Lachnospiraceae | Blautia | −3.97 | 0.012 | 0.47 | 0.03 | |
| MQ/83/3-BC08_bin.49 | Firmicutes | Ruminococcaceae | Ruthenibacterium | −2 | 0.05 | 0.28 | 0.07 | |
| HQ/98/0-BC08_bin.2 | Verrucomicrobiota | Akkermansiaceae | Akkermansia | −1.86 | 0.006 | 0.91 | 0.25 | |
| HQ/100/0-BC01_bin.62 | Firmicutes | Enterobacteriaceae | Escherichia | −1.76 | 0.036 | 0.95 | 0.28 | |
| Highest abundance in Big chicken | MQ/85/0-BC06_bin.111 | Firmicutes | Clostridia CAG-727 | UBA11940 | 3.30616 | < 0.001 | 0.17 | 0.56 |
| MQ/83/1-BC03_bin.150 | Firmicutes | Christensenellales CAG-74 | – | 2.963665 | < 0.001 | 0.12 | 0.33 | |
| MQ/53/0-BC05_bin.97 | Firmicutes | Butyricicoccaceae | Butyricicoccus | 2.522999 | 0.005 | 0.07 | 0.14 | |
| MQ/51/2-BC03_bin.153 | Firmicutes | Butyricicoccaceae | Butyricicoccus | 2.487598 | 0.003 | 0.1 | 0.19 | |
| MQ/77/1-BC06_bin.26 | Firmicutes | Lachnospiraceae | Blautia | 2.442135 | 0.005 | 1.31 | 2.29 | |
| HQ/93/1-BC09_bin.81 | Firmicutes | Lachnospiraceae | Ruminococcus_G | 2.338411 | < 0.001 | 0.15 | 0.48 | |
| HQ/92/1-BC01_bin.127 | Firmicutes | Lachnospiraceae | Ruminococcus_G | 2.267726 | < 0.001 | 0.11 | 0.33 | |
| MQ/78/2-BC01_bin.64 | Firmicutes | Oscillospiraceae | Flavonifractor | 2.137273 | < 0.001 | 0.18 | 0.42 | |
| MQ/81/1-BC05_bin.63 | Firmicutes | Ruminococcaceae | Gemmiger | 2.103554 | 0.006 | 0.15 | 0.42 | |
| MQ/64/0-BC06_bin.117 | Firmicutes | Oscillospiraceae | Flavonifractor | 1.997778 | < 0.001 | 0.14 | 0.39 | |
| MQ/65/2-BC08_bin.109 | Firmicutes | Acutalibacteraceae | Acutalibacter | 1.992992 | 0.003 | 0.05 | 0.15 | |
| MQ/82/0-BC01_bin.108 | Firmicutes | Lachnospiraceae | Eubacterium_E | 1.793982 | 0.015 | 0.13 | 0.21 | |
| HQ/95/3-BC05_bin.99 | Firmicutes | Ruminococcaceae | Faecalibacterium | 1.738848 | 0.001 | 0.97 | 2.01 | |
| HQ/96/0-BC10_bin.135 | Firmicutes | Clostridia CAG-727 | – | 1.69629 | 0.03 | 0.47 | 0.89 | |
| MQ/65/0-BC06_bin.35 | Firmicutes | Lachnospiraceae | Eisenbergiella | 1.693181 | 0.042 | 0.07 | 0.24 | |
| MQ/58/1-BC03_bin.187 | Firmicutes | Lachnospiraceae | Clostridium_M | 1.670223 | 0.005 | 0.09 | 0.15 | |
| HQ/99/0-BC06_bin.137 | Firmicutes | Ruminococcaceae | Gemmiger | 1.658808 | 0.002 | 0.59 | 1.99 | |
| MQ/75/1-BC10_bin.88 | Firmicutes | Christensenellales CAG-74 | – | 1.613336 | 0.016 | 0.18 | 0.38 | |
| MQ/56/0-BC03_bin.169 | Firmicutes | Lachnospiraceae | Faecalicatena | 1.603117 | 0.026 | 0.1 | 0.15 | |
| MQ/67/1-BC09_bin.14 | Firmicutes | Lachnospiraceae | Fusicatenibacter | 1.580042 | 0.036 | 0.08 | 0.14 | |
| HQ/92/1-BC08_bin.120 | Firmicutes | Unknown Lachnospiraceae | – | 1.568899 | 0.042 | 0.18 | 0.34 | |
| HQ/97/1-BC06_bin.90 | Firmicutes | Ruminococcaceae | Faecalibacterium | 1.476226 | 0.002 | 1.1 | 2.12 | |
| MQ/66/0-BC08_bin.61 | Firmicutes | Ruminococcaceae | Gemmiger | 1.457215 | 0.015 | 0.08 | 0.19 | |
| MQ/89/1-BC03_bin.47 | Firmicutes | Lachnospiraceae | – | 1.399621 | 0.044 | 0.2 | 0.32 | |
| HQ/96/2-BC04_bin.170 | Firmicutes | Lachnospiraceae | Fusicatenibacter | 1.309454 | 0.036 | 0.3 | 0.42 | |
| MQ/68/1-BC02_bin.193 | Firmicutes | Ruminococcaceae | Faecalibacterium | 1.307194 | 0.013 | 1.26 | 1.91 | |
| MQ/84/2-BC06_bin.56 | Firmicutes | Butyricicoccaceae | Agathobaculum | 1.278165 | 0.037 | 0.17 | 0.23 | |
| MQ/80/0-BC08_bin.25 | Firmicutes | Ruminococcaceae | Gemmiger | 1.25775 | 0.034 | 0.64 | 1.35 | |
| HQ/99/0-BC06_bin.15 | Actinobacteriota | Bifidobacteriaceae | Bifidobacterium | 1.118436 | 0.044 | 2.79 | 4.76 | |
| HQ/97/0-BC05_bin.93 | Firmicutes | Acutalibacteraceae | UBA1417 | 1.030908 | 0.029 | 0.12 | 0.22 | |
| MQ/68/0-BC06_bin.99 | Firmicutes | Acutalibacteraceae | UBA1417 | 0.968859 | 0.05 | 0.09 | 0.17 |