Phylum | Class | Order | Family | Genus | Species | Species ID | |
---|---|---|---|---|---|---|---|
Bacteroidetes (49.6%) | Bacteroidia (49.6%) | Bacteroidales (49.6%) | Bacteroidaceae (7.7%) | Bacteroides (7.7%) | Bacteroides caecimuris | 1796613 | "Non-SPF—core species" (90.3%) |
Muribaculaceae (41.9% | Duncaniella (8.7%) | Duncaniella sp. B8 | 2576606 | ||||
Duncaniella sp. C9 | 2530392 | ||||||
Muribaculum (33.2%) | Muribaculum sp. H5 | 2530393 | |||||
Muribaculum sp. TLL-A4 | 2530390 | ||||||
Muribaculum intestinale | 1796646 | ||||||
Firmicutes (16.6%) | Bacilli (9.5%) | Lactobacillales (9.5%) | Enterococcaceae (0.3%) | Enterococcus (0.3%) | Enterococcus faecalis | 1351 | |
Lactobacillaceae (9.2%) | Lactobacillus (9.2%) | Lactobacillus johnsonii | 33959 | ||||
Lactobacillus murinus | 1622 | ||||||
Lactobacillus reuteri | 1598 | ||||||
Clostridia (7.1%) | Clostridiales (7.1%) | Clostridiaceae (0.3%) | Mordavella (0.3%) | Mordavella sp. Marseille-P3756 | 2086584 | ||
Lachnospiraceae (3.8%) | Lachnoclostridium (3.3%) | [Clostridium] scindens | 29347 | ||||
Lachnoclostridium phocaeense | 1871021 | ||||||
Lachnoclostridium sp. YL32 | 1834196 | ||||||
Unknown (0.5%) | Lachnospiraceae bacterium GAM79 | 2109691 | |||||
Oscillospiraceae (0.1%) | Unknown (0.1%) | Oscillospiraceae bacterium J115 | 2093857 | ||||
Peptostreptococcaceae (1.6%) | Clostridioides (1.6%) | Clostridioides difficile | 1496 | ||||
Ruminococcaceae (0.9%) | Faecalibacterium (0.7%) | Faecalibacterium prausnitzii | 853 | ||||
Flavonifractor (0.2%) | Flavonifractor plautii | 292800 | |||||
Unknown (0.4%) | Unknown (0.4%) | Clostridiales bacterium CCNA10 | 2109688 | ||||
Proteobacteria (20.3%) | Epsilonproteobacteria (20.3%) | Campylobacterales (20.3%) | Helicobacteraceae (20.3%) | Helicobacter (20.3%) | Helicobacter typhlonius* | 76936 | |
Helicobacter hepaticus* | 32025 | ||||||
Actinobacteria (1.3%) | Actinobacteria (1.3%) | Bifidobacteriales (1.3%) | Bifidobacteriaceae (1.3%) | Bifidobacterium (1.3%) | Bifidobacterium pseudolongum | 1694 | |
Verrucomicrobia (2.4%) | Verrucomicrobiae (2.4%) | Verrucomicrobiales (2.4%) | Akkermansiaceae (2.4%) | Akkermansia (2.4%) | Akkermansia muciniphila | 239935 |