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Table 1 Core taxonomic units shared between tissues

From: Bacterial community dynamics during embryonic development of the little skate (Leucoraja erinacea)

Taxa

Egg capsule

External gill/embryonic skin

Internal gill

Adult skin

Actinomarinales

x

  

x

Alphaproteobacteria

x

x

x

x

Bacteroidia

x

x

 

x

Burkholderiaceae

x

  

x

Candidatus Nitrosopumilus

x

 

x

 

Chloroplast

x

 

x

x

Colwellia

x

 

x

x

Escherichia-Shigella

x

x

x

 

Flavobacteriaceae

x

x

x

x

Flavobacteriales

x

  

x

Gammaproteobacteria

x

x

x

x

Halieaceae

x

x

 

x

Lentisphaera

x

 

x

x

Pirellulaceae

x

x

x

x

Pseudoalteromonas

x

 

x

x

Pseudomonas

x

  

x

Rhizobiaceae

x

 

x

x

Rhodobacteraceae

x

x

x

x

Rhodothermaceae

x

  

x

Rubritalea

x

  

x

Saprospiraceae

x

x

x

x

SAR11 clade (Clade I)

x

 

x

x

Shewanella

x

 

x

 

Sphingomonadaceae

x

 

x

x

Sulfitobacter

x

  

x

Synechococcus CC9902

x

 

x

 

Thermoanaerobaculaceae Subgroup 10

x

  

x

Thiothrix sp. FBR0112

x

  

x

Ulvibacter

x

 

x

 

Uncultured verrucomicrobium DEV007

x

 

x

 

Verrucomicrobium sp. KLE1210

x

  

x

Vibrio

x

  

x

Vibrionaceae

x

 

x

x

  1. List of taxa identified as part of the common core microbiota at a 75% presence cut-off in a least two of the following tissues: egg capsule, combined external gill (stages 26–30) and embryonic skin, internal gill (stage 33-adult), and adult skin