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Table 3 Exclusive network statistics by BE or PE

From: The rumen liquid metatranscriptome of post-weaned dairy calves differed by pre-weaning ruminal administration of differentially-enriched, rumen-derived inocula

Network measurements

Microbial inoculations

BE(+)

BE(−)

PE(+)

PE(−)

Total nodes

137

106

137

128

Total edges

260

123

199

194

Positive

193

77

132

136

Negative

67

46

67

58

Positive (%)

74.231

62.602

66.332

70.103

Negative (%)

25.769

37.398

33.668

29.897

No. of exclusive nodes

MD: 70; Arc: 4; Bac: 25

MD: 13; Arc: 1; Bac: 8

MD: 27; Arc: 2; Bac: 8

MD: 48; Arc: 2; Bac: 21

Abundance of exclusive node (%)

MD: 6.462%

Arc: 24.597%

Bac: 21.120%

MD: 0.418%

Arc: 0.549%

Bac: 1.569%

MD: 0.857%

Arc: 9.485%

Bac: 1.441%

MD: 5.084%

Arc: 67.380%

Bac: 14.901%

Network diameter

16

13

16

12

Graph density

0.028

0.022

0.021

0.024

Modularity

0.675

0.815

0.744

0.706

No. of communities

17

16

22

22

Average clustering coefficient

0.301

0.117

0.306

0.268

Average path length

5.843

5.741

5.810

4.627

Best 'Authority' node

M00022

Prevotella

M00184

Sodaliphilus

M00049

Desulfobulbus

M00014

Ligilactobacillus

Best 'Eigenvector centrality' node

M00022

Prevotella

M00184

Sodaliphilus

M00049

Desulfobulbus

M00014

Ligilactobacillus

  1. BE, bacterial-enriched rumen fluid; PE, protozoal-enriched rumen fluid; MD, KEGG modules; Arc, archaeal genera; Bac, bacterial genera