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Table 3 Phyla relative abundances in mucosa microbiotas of captive groups

From: Characterization of captive and wild 13-lined ground squirrel cecal microbiotas using Illumina-based sequencing

Phylum

Relative abundance (%)

Significant Comparisons

Summer

Torpor

IBA

Spring

Firmicutes

57.981 ± 1.910

30.611 ± 4.687

30.884 ± 3.045

45.113 ± 3.419

Summer-Torpor

Summer-IBA

Bacteroidetes

35.592 ± 1.652

45.203 ± 5.749

41.836 ± 2.778

45.942 ± 3.062

–

Verrucomicrobia

1.405 ± 0.336

12.219 ± 5.786

19.152 ± 6.099

4.266 ± 2.049

–

Proteobacteria

1.355 ± 0.347

3.282 ± 0.245

3.467 ± 0.740

1.955 ± 0.544

–

Kiritimatiellaeota

0.171 ± 0.164

5.523 ± 3.395

1.358 ± 0.978

0.809 ± 0.674

–

Cyanobacteria

0.807 ± 0.238

1.012 ± 0.241

0.482 ± 0.192

0.365 ± 0.274

–

Tenericutes

1.019 ± 0.361

0.103 ± 0.036

0.153 ± 0.054

1.197 ± 0.541

–

Actinobacteria

0.189 ± 0.035

0.125 ± 0.049

0.228 ± 0.048

0.145 ± 0.054

–

Elusimicrobia

0.020 ± 0.005

0.118 ± 0.079

0.538 ± 0.281

0.000 ± 0.000

–

Epsilonbacteraeota

0.122 ± 0.079

0.144 ± 0.135

0.018 ± 0.018

0.000 ± 0.000

–

Unclassified

1.339 ± 0.800

1.657 ± 1.573

1.883 ± 1.589

0.208 ± 0.055

–

  1. Phyla have total relative abundances > 1% and are displayed from overall highest relative abundance to lowest relative abundance. Relative abundances are displayed as mean ± standard error. Significant comparisons had adjusted p-values < 0.05 based on ANOVA and Tukey's HSD tests, or had adjusted p-values < 0.025 based on Kruskal–Wallis and Dunn's Tests, depending on data normality