Fig. 1
From: Microbiome structure in large pelagic sharks with distinct feeding ecologies
Maximum Likelihood phylogeny using a Dayhoff matrix-based model for three Photobacterium Metagenome Assembled Genomes (MAGs) from Carcharodon carcharias (bolded), along with 26 closely related genomes. Phylogeny was constructed on the basis of 91 concatenated single-copy marker genes identified by MiGA using Hidden Markov Models (HMMs) via HMMER3 with default settings. Marker genes were aligned using clustalW and then concatenated in MEGAX, numbers indicate bootstrap values (500 iterations)