Fig. 8
available at all 5 time points. Families are given the same color as their parent orders. Simpson’s Diversity Index of samples at each time point, with Wilcoxon signed rank P-values comparing D1, D7, and D60 samples (c). Beta diversity between D1, D7 and D60 samples from the same patient, measured by Bray–Curtis dissimilarity (d) and UniFrac distance (e) and labeled with Wilcoxon signed rank P-values
Changes in fecal microbiota composition over the study period. Taxa are visualized by order (a) and family (b). Points bars represent the median relative abundance and interquartile range of the five most abundant taxa across the 25 samples for which 16S data were