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Table 1 Number of individual ARGs identified using read- and assembly-based approaches in 48 rumen samples of beef steers

From: Expressions of resistome is linked to the key functions and stability of active rumen microbiome

ARG classes

Metagenomic profiling

Metatranscriptomic profiling

Read-based

Assembly-based

Read-based

Assembly-based

Total

183

103

60

37

 Aminoglycoside

18

10

5

1

 Bacitracin

3

2

1

2

 Beta-lactam

29

7

9

1

 Bleomycin

1

–

–

–

 Carbomycin

1

1

–

1

 Chloramphenicol

5

3

–

–

 Fosfomycin

1

1

–

–

 Fosmidomycin

1

1

–

–

 Kasugamycin

–

1

–

–

 MLS

29

16

10

3

 MDR

42

20

13

9

 Polymyxin

1

–

1

–

 Quinolone

2

1

–

–

 Rifamycin

2

1

–

–

 Sulfonamide

2

3

1

1

 Tetracenomycin

1

16

–

–

 Tetracycline

23

–

14

13

 Trimethoprim

–

2

–

–

 Unclassified

7

3

2

2

 Vancomycin

15

15

4

4

  1. MLS macrolides-lincosamides-streptogramins; MDR multi-drug resistant