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Fig. 5 | Animal Microbiome

Fig. 5

From: Links between host genetics, metabolism, gut microbiome and amoebic gill disease (AGD) in Atlantic salmon

Fig. 5

Differential abundance analysis between starved and fed fish in PC samples (a) and MG samples (b). Important genera were determined with random forest classification. Mean decrease gini served as indicator value. c Shows the source tracking analysis determined by the FEAST framework. Bars show the average contribution of each source (either feed, water or unknown) to the overall microbial community for different gut compartments, feeding status and timepoints. d Illustrates a principal coordinates analysis (PCoA) derived from weighted UniFrac distances between environmental samples (MW = Marine water and feed), starved fish ((48 h feed withdrawal) and recently fed fish at two different points in time (T0 and T1). T1 was sampled 14 days after T0. Lines mark the position of the centroids of each group. For illustration purposes no differentiation between PC and MG samples was made. However, differentiation was included in Permanova calculations (Additional file 1: Tables S7, S8)

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Animal Microbiome

ISSN: 2524-4671