Table 4 The (ten) most prevalent bacterial species observed at each anatomical site in both control and MRF-treated datasets
Site | Rank | Control (Species) | η% | MRF (Species) | η% |
|---|---|---|---|---|---|
Duodenum | 1 | Lactobacillus crispatus | 26.636 | Pseudomonas veronii | 34.906 |
| Â | 2 | Bifidobacterium animalis | 21.394 | Pseudomonas sp. TKP | 14.440 |
| Â | 3 | Lactobacillus salivarius | 21.043 | Lactobacillus aviarius | 8.370 |
| Â | 4 | Lactobacillus reuteri | 7.874 | Lactobacillus kitasatonis | 6.143 |
| Â | 5 | Pseudomonas veronii | 2.766 | Shewanella algae | 6.010 |
| Â | 6 | Lactobacillus kitasatonis | 2.676 | Halomonas chromatireducens | 4.046 |
| Â | 7 | Clostridioides difficile | 2.447 | Bifidobacterium animalis | 3.062 |
| Â | 8 | Lactobacillus acidophilus | 2.386 | Lactobacillus crispatus | 2.621 |
| Â | 9 | Lactobacillus aviarius | 2.020 | Halomonas sp. 1513 | 2.284 |
| Â | 10 | Lactobacillus agilis | 1.932 | Halomonas sp. JCM 19,032 | 2.042 |
Jejunum | 1 | Lactobacillus crispatus | 36.478 | Lactobacillus aviarius | 36.706 |
| Â | 2 | Bifidobacterium animalis | 16.176 | Bifidobacterium animalis | 13.624 |
| Â | 3 | Lactobacillus salivarius | 12.653 | Lactobacillus crispatus | 9.631 |
| Â | 4 | Lactobacillus aviarius | 5.401 | Lactobacillus reuteri | 8.691 |
| Â | 5 | Lactobacillus reuteri | 4.211 | Lactobacillus kitasatonis | 7.094 |
| Â | 6 | Lactobacillus kitasatonis | 3.877 | Lactobacillus acidophilus | 5.600 |
| Â | 7 | Lactobacillus acidophilus | 3.733 | Lactobacillus vaginalis | 4.961 |
| Â | 8 | Clostridioides difficile | 2.631 | Lactobacillus frumenti | 1.192 |
| Â | 9 | Lactobacillus johnsonii | 1.335 | Lactobacillus johnsonii | 0.815 |
| Â | 10 | Lactobacillus agilis | 1.227 | Lactobacillus pontis | 0.670 |
Ileum | 1 | Lactobacillus crispatus | 36.279 | Bifidobacterium animalis | 23.394 |
| Â | 2 | Lactobacillus salivarius | 23.668 | Lactobacillus crispatus | 18.823 |
| Â | 3 | Bifidobacterium animalis | 13.321 | Lactobacillus kitasatonis | 17.042 |
| Â | 4 | Lactobacillus acidophilus | 3.406 | Lactobacillus aviarius | 8.292 |
| Â | 5 | Lactobacillus aviarius | 3.290 | Lactobacillus reuteri | 6.923 |
| Â | 6 | Escherichia coli | 2.986 | Lactobacillus vaginalis | 5.449 |
| Â | 7 | Lactobacillus reuteri | 2.938 | Lactobacillus acidophilus | 3.185 |
| Â | 8 | Lactobacillus kitasatonis | 2.446 | Lactobacillus johnsonii | 3.040 |
| Â | 9 | Ca Arthromitus sp. SFB-rat-Yit | 2.215 | Ca. Arthromitus sp. SFB-rat-Yit | 2.839 |
| Â | 10 | Lactobacillus agilis | 1.650 | Lactobacillus frumenti | 0.947 |
Cecum | 1 | Faecalibacterium sp. An122 | 53.414 | Faecalibacterium sp. An122 | 57.393 |
| Â | 2 | Bifidobacterium gallinarum | 7.796 | Blautia sp. An81 | 8.425 |
| Â | 3 | Bifidobacterium pullorum | 4.714 | Eubacterium sp. An11 | 3.297 |
| Â | 4 | Barnesiella intestinihominis | 3.920 | Blautia hansenii | 2.432 |
| Â | 5 | Blautia sp. An81 | 3.288 | Ruminococcus lactaris | 2.247 |
| Â | 6 | Lachnoclostridium sp. An76 | 2.352 | Bacteroides fragilis | 2.213 |
| Â | 7 | Eubacterium sp. An11 | 2.136 | Lactobacillus crispatus | 2.061 |
| Â | 8 | Bacteroides fragilis | 2.122 | Lachnoclostridium sp. An76 | 2.045 |
| Â | 9 | Escherichia coli | 1.937 | Barnesiella intestinihominis | 1.784 |
| Â | 10 | Blautia hansenii | 1.925 | Pseudoflavonifractor sp An184 | 1.385 |