Table 1 Mean relative abundance of bacteria present at ≥ 1% at phylum, genus and species level across all sampling locations
From: Bacterial topography of the upper and lower respiratory tract in pigs
Phylum (%) | Genus (%) | Species (%) |
|---|---|---|
Firmicutes (48.2) | Streptococcus (14.6) | S. suis (4.2), S. porci (1.9) |
| Â | Clostridium sensu stricto 1 (10.1) | C. perfringens (9.3) |
| Â | Mycoplasma (4.4) | M. hyorhinis (4.2) |
| Â | Veillonella (2.8) | V. caviae (2.5) |
| Â | Lactobacillus (2.8) | L. amylovorus (1.9) |
| Â | Peptostreptococcus (2.7) | Â |
| Â | Paeniclostridium (2.1) | P. sordellii (2.1) |
| Â | Weissella (2.0) | W. cibaria (1.7) |
| Â | Staphylococcus (1.5) | Â |
Proteobacteria (37.1) | Glasserella (15.7) | G. indolica (15.7) |
| Â | Escherichia-Shigella (9.6) | Â |
| Â | Mannheimia (2.4) | M. varigena (2.4) |
| Â | Acinetobacter (1.8) | A. lwoffii (1.2) |
| Â | Pasteurella (1.5) | P. multocida (1.4) |
| Â | Klebsiella (1.2) | Â |
Bacteroidetes (8.3) | Bergeyella (3.2) | B. zoohelcum (3.1) |
| Â | Empedobacter (1.6) | E. brevis (1.6) |
| Â | Prevotella (1.2) | Â |
Actinobacteria (3.9) | Rothia (2.5) | R. nasimurium (2.4) |