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Fig. 2 | Animal Microbiome

Fig. 2

From: Genomic analysis on broiler-associated Clostridium perfringens strains and exploratory caecal microbiome investigation reveals key factors linked to poultry necrotic enteritis

Fig. 2

a Mid-point rooted maximum-likelihood tree based on 228 SNPs of 14 genomes (in 1810 core genes) in lineage Vf, labelled by country, origin, host health state, year of isolation and within-lineage pair-wise SNP comparison. Data: Mean ± S.D. b Unrooted ML tree indicating SNP distance in between major branches. c Pair-wise SNP comparison between isolates in sub-lineages Ve vs Vf, and within sub-lineage Vf. d Genome-wide pair-wise ANI comparison between isolates in sub-lineages Ve vs Vf, and within sub-lineage Vf. Data: Kruskal-Wallis test, Dunn multiple comparison. Means were indicated in each group

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