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Fig. 3 | Animal Microbiome

Fig. 3

From: Genomic analysis on broiler-associated Clostridium perfringens strains and exploratory caecal microbiome investigation reveals key factors linked to poultry necrotic enteritis

Fig. 3

Mid-point rooted maximum-likelihood tree based on 20,194 SNPs from 1810 core genes aligned with key virulence and resistance determinants, and predicted plasmids present in each genome for 88 broiler-associated C. perfringens. Coloured cells indicate predicted presence of genes/plasmids. AMR: Anti-Microbial Resistance. Scale bar, ~ 2000 SNPs

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