Table 3 Significantly enriched taxa at the family, genus and species level found in SFM foals from ages 1 to 6 weeks (p < 0.05, Kruskal-Wallis, LDA score > 2.0) compared with all other weeks
From: Development of the equine hindgut microbiome in semi-feral and domestic conventionally-managed foals
| Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | |
|---|---|---|---|---|---|---|
| Firmicutes | Peptostreptococcaceae gen. | Holdemania spp. | Veillonella dispar | Coprobacillus spp. | Selenomonas noxia | |
| Clostridium spp. | Veillonella spp. | Mogibacterium spp. | ||||
| Ruminococcus gnavus | Christensenellaceae gen. | Mogibacteriaceae gen. | ||||
| Ruminococcus spp. | Lachnospiraceae gen. | |||||
| Bacteroidetes | Odoribacter spp. | S24_7 gen. | YRC22 spp. | |||
| CF231 spp. | Prevotella spp. | Rikenellaceae gen. | ||||
| Paraprevotellaceae gen. | Prevotellaceae gen. | |||||
| Prevotella copri | ||||||
| Paraprevotellaceae gen. | ||||||
| Proteobacteria | Aeromonadaceae gen. | Desulfovibrio spp. | Methylobacteriaceae gen. | Campylobacter spp. | ||
| Helicobacter spp. | Campylobacteraceae gen. | |||||
| Euryarchaeota | Dehalobacteriaceae gen. | Methanobrevibacter spp. | vadinCA11 spp. | |||
| Methanobacteriaceae gen. | Methanomassiliicoccaceae gen. | |||||
| Methanocorpusculaceae gen. | ||||||
| Methanocorpusculum spp. | ||||||
| Actinobacteria | Coriobacteriaceae gen. | |||||
| Fibrobacteres | Fibrobacter spp. | |||||
| Fibrobacteraceae gen. | ||||||
| Fibrobacter succinogenes | ||||||
| Spirochaetes | Treponema spp. | |||||
| Planctomycetes | Pirellulaceae gen. | |||||
| Chlamydiae | Chlamydia spp. | |||||
| Verrucomicrobia | RFP12 gen. |