Table 5 Significantly altered (increased or decreased) genera observed at each anatomical site
Site | Genus | ηControl (n) | ηMRF (n) | PBD | Change | FC |
|---|---|---|---|---|---|---|
Duodenum | Clostridioides | 936.993 | 0 | 0.0002 | Decrease | Eradication |
|  | Escherichia | 57.812 | 5.770 | 0.0011 | Decrease | −0.900 |
|  | Bifidobacterium | 8571.620 | 903.799 | 1.49e−08 | Decrease | −0.895 |
|  | Lactobacillus | 28,928.722 | 19,750.855 | 5.43e−08 | Decrease | −0.317 |
|  | Shewanella | 225.335 | 1742.348 | 2.03e−08 | Increase | 6.732 |
|  | Pseudomonas | 1492.102 | 13,954.595 | 9.60e−09 | Increase | 8.352 |
|  | Halomonas | 302.917 | 3176.654 | 8.67e−07 | Increase | 9.487 |
Ileum | Streptococcus | 174.335 | 4.979 | 0.0191 | Decrease | −0.971 |
|  | Escherichia | 834.585 | 38.234 | 0.0080 | Decrease | −0.954 |
|  | Shigella | 105.048 | 6.101 | 0.0007 | Decrease | −0.942 |
|  | Agarivorans | 54.887 | 8.581 | 0.0279 | Decrease | −0.844 |
Cecum | Alistipes | 116.939 | 2.955 | 0.0145 | Decrease | −0.975 |
|  | Bifidobacterium | 6256.469 | 827.671 | 0.0001 | Decrease | −0.868 |
|  | Oscillospiraceae[is] | 340.433 | 220.868 | 0.0009 | Decrease | −0.351 |
| Â | Eubacterium | 1017.654 | 1391.518 | 0.0419 | Increase | 0.367 |
| Â | Ruminococcaceae[is] | 26.154 | 36.030 | 0.0451 | Increase | 0.378 |
| Â | Anaerostipes | 137.596 | 234.771 | 0.0125 | Increase | 0.706 |
|  | Firmicutes[is] | 91.309 | 164.287 | 4.96e−05 | Increase | 0.799 |
|  | Blautia | 2184.069 | 4695.135 | 3.97e−05 | Increase | 1.150 |
|  | Kineothrix | 8.866 | 20.484 | 9.85e−12 | Increase | 1.310 |
| Â | Lactobacillus | 860.654 | 3017.700 | 0.0027 | Increase | 2.506 |