Table 1 Number of correlations between taxa of public health interest and genes implicated in antibiotic resistance, HGT, and virulence

ARG

2

8

4

3

3

3

2

3

0

0

1

 Aminoglycoside

1

1

1

 Beta-lactam

1

1

 Fluoroquinolone

1

1

 Fosmidomycin

1

 MLS

1

1

1

2

 Multidrug

1

5

3

3

 Peptide

1

1

 Rifamycin

1

 Tetracycline

1

HGT/MGE

17

10

12

13

11

15

12

7

5

1

0

 Insertion sequence

1

1

 Integration/excision

1

1

1

1

 Integron

1

 Phage

8

6

7

1

6

2

1

6

3

 Plasmid

1

1

5

1

4

5

1

 Regulation, competence

1

2

1

 Replication/recombination/repair

7

2

3

2

2

3

1

 Stability/transfer/defense

1

2

2

1

2

4

1

1

Virulence

47

42

15

13

14

8

11

10

2

2

0

 Adherence

4

2

1

4

1

1

4

1

 Biofilm

1

1

 Effector delivery system

36

31

6

6

4

3

 Exoenzyme

1

2

1

 Exotoxin

4

1

1

1

Immune modulation

2

4

2

4

2

1

 Invasion

1

1

1

 Motility

7

2

1

2

1

 Nutritional/Metabolic factor

1

3

2

3

1

2

1

1

 Others

1

 Stress survival

1

Degree of centrality

66

60

31

29

28

26

25

20

7

3

1