Table 1 QTL mapping statistics for CMM-RA, CMM-QMP, and ddPCR-DNA/RNA with significant associations
Type | Taxon | Trait | Chr | Peak SNP | LOD score | Confidence interval | Size (Mb) | Phenotypic variance (%) assoc. with peak SNP |
|---|---|---|---|---|---|---|---|---|
CMM-RA | Order | Enterobacteriales | 1 | UNC1088683 | 5.49 | 88.61–90.40 | 1.79 | 9.92 |
|  | Family | Enterobacteriaceae | 1 | UNC1088683 | 5.49 | 88.61–90.40 | 1.79 | 9.92 |
CMM-QMP | Class | Deltaproteobacteria | 1 | UNC1143014 | 6.03 | 93.30–95.02 | 1.72 | 11.01 |
|  | Genus | Pelomonas | 11 | UNC20541010 | 4.42 | 121.68–121.76 | 0.08 | 8.19 |
|  |  | Streptococcus | 16 | JAX00427186 | 4.85 | 86.88–88.15 | 1.27 | 8.96 |
|  | ASV | ASV8_Propionibacterium | 14 | UNC24933570 | 6.36 | 122.04–125.01 | 2.97 | 11.58 |
ddPCR-DNA |  | Lactobacillus | 1 | UNC1677482 | 6.38 | 131.79–133.44 | 1.65 | 11.43 |
ddPCR-RNA |  | Pelomonas | 4 | UNC6891976 | 5.74 | 21.98–25.57 | 3.59 | 10.35 |