Fig. 3

Heatmap showing the correlation between “non-probiotics” microbiome taxa and Campylobacter-positive feces samples. All genera observed in the analysis have a negative correlation with Campylobacter-positive feces samples at the start and end-time point of sample collection. The only negative correlation identified at the mid-time point belongs to the group of OTUs that could not be identified at the genus level (g_). Strong negative correlations (r ≤ -0.7, p-value < 0.05) are depicted in red