Deciphering the functional diversity of the gut microbiota of the black soldier fly (Hermetia illucens): recent advances and future challenges

Eke, Maurielle; Tougeron, Kévin; Hamidovic, Alisa; Tinkeu, Leonard S. Ngamo; Hance, Thierry; Renoz, François

doi:10.1186/s42523-023-00261-9

Animal Microbiome

Table 2 Summary of the taxonomic composition of the bacterial microbiota associated with H. illucens

From: Deciphering the functional diversity of the gut microbiota of the black soldier fly (Hermetia illucens): recent advances and future challenges

References	Life stage	Substrates	Dominant identified phyla	Dominant bacterial genera
Jeon et al. 2011 [38]	Larvae	Food waste; calf forage; cooked rice	Actinomycetota, Bacteroidota, Bacillota, Fusobacteria and Pseudomonadota	Citrobacter, Enterococcus, Klebsiella, Leminorella, Morganella and Providencia
Zheng et al. 2013 [57]	Eggs, larvae, prepupae, pupae, adults	Gainesville diet	Acidobacteria, Verrucomicrobia, Bacillota, Actinomycetota, Pseudomonadota and Bacteroidota	Providencia, Bacteroides, Sphyngobacterium, Dysgonomonas and Sanguibacter
Zheng et al. 2013 [58]	Eggs and larvae	Gainesville diet	Bacillota, Actinomycetota, Bacteroidota and Pseudomonadota	Bacillus, Cellulomonas, Empedobacter, Enterobacter, Gordonia, Kurthia, Microbacterium and Micrococcus
Cai et al. 2018 [60]	Larvae	Chicken manure	Bacillota, Pseudomonadota, Bacteroidota and Actinomycetota	Providencia, Enterococcus, Morganella and Dysgonomonas
Cai et al. 2018 [61]	Larvae	Wheat bran	Bacillota, Pseudomonadota, Bacteroidota, Actinomycetota and Fusobacteriota	Flavisolibacter, Proteus, Klebsiella, Actinomyces, Globicatella, Providencia, Enterococcus and Ignatzschineria
Bruno et al. 2019 [39]	Larvae	Mixture of vegetable flours; vegetables; fish meal	Actinomycetota, Bacillota, Bacteroidota and Pseudomonadota	Dysgonomonas, Providencia, Blautia, Shingobacterium, Morganella and Bacillus
Jiang et al. 2019 [30]	Larvae	Raw food waste	Bacillota, Bacteroidota and Pseudomonadota	Bacillus, Lactobacillus, Dysgonomonas, Enterococcus and Providencia
Zhan et al. 2019 [41]	Larvae	Food waste; poultry manure; dairy manure; swine manure	Bacillota, Bacteroidota and Pseudomonadota	Not specified
Wynants et al. 2019 [40]	Larvae	Fruit/vegetable waste; supermarket and restaurant waste; poultry blood; poultry manure; chicken feed; wheat bran; wheat flour; yeast concentrate; brewer’s spent grains	Pseudomonadota and Bacillota	Morganella, Bacillus, Enterococcus, Providencia and Lactobacillus
Ao et al. 2020 [43]	Larvae	Mixture of wheat flour and bran; swine/chicken manure	Bacillota, Bacteroidota, Actinomycetota and Pseudomonadota	Enterococcus, Providencia, Morganella, Klebsiella, Ignatzschineria and Clostridium
Callegari et al. 2020 [80]	Larvae	Mixture of wheat germ, alfalfa and corn flour	Pseudomonadota, Bacillota, Actinomycetota and Bacteroidota	Providencia, Morganella, Klebsiella, Escherichia, Acinetobacter, Stenotrophomonas, Pseudomonas and Enterococcus
Cifuentes et al. 2020 [62]	Larvae and prepupae	Commercial chicken feed	Bacillota, Bacteroidota, Actinomycetota and Pseudomonadota	Morganella, Klebsiella, Providencia, Enterobacter, Enterococcus, Bacillus, Proteus, Actinomyces and Dysgonomonas
Khamis et al. 2020 [63]	Larvae	Not specified	Bacillota, Bacteroidota, Actinomycetota and Pseudomonadota	Ignatzschineria, Enterococcus, Dysgonomonas, Morganella, Providencia and Lactobacillus
Klammsteiner et al. 2020 [42]	Larvae	Chicken feed; freshly cut grass; vegetables	Bacillota, Bacteroidota, Actinomycetota and Pseudomonadota	Actinomyces, Dysgonomonas, Enterococcus and Morganella
Liu at al. 2020 [64]	Larvae	Soya meal	Bacillota, Bacteroidota, Actinomycetota and Pseudomonadota	Enterococcus, Ignatzschineria, Providencia and Morganella,
Raimondi et al. 2020 [65]	Larvae and prepupae	Mixture of vegetable flours	Bacillota, Bacteroidota, Actinomycetota and Pseudomonadota	Providencia, Klebsiella, Bacillus, Morganella, Alcaligenes, Bordetella and Kerstersia
Shelomi et al. 2020 [54]	Larvae	Postproduction soy pulp; postconsumer cafeteria waste	Bacteroidota and Bacillota	Bacillus, Citrobacter, Dysgonomonas, Porphyromonas and Parabacteroides
Wu et al. 2020 [74]	Larvae	Wheat bran	Bacteroidota, Actinomycetota, Pseudomonadota and Bacillota	Salana, Parabacteroidetes and Campylobacter
Galassi et al. 2021 [55]	Larvae	Hen diet; okara; maize distillers; brewer’s grains	Bacteroidota, Actinomycetota, Pseudomonadota and Bacillota	Providencia, Morganella and Klebsiella
Tegtmeier et al. 2021 [44]	Larvae	Chicken feed; cottonseed press cake	Pseudomonadota and Bacillota	Morganella, Providencia and Enterococcus
Tegtmeier et al. 2021 [66]	Larvae	Chicken feed	Bacillota, Bacteroidota, Actinomycetota and Pseudomonadota	Morganella, Enterococcus, Proteus, Providencia, Sphingobacterium, Klebsiella, Paenalcaligenes, Corynebacterium and Citrobacter
Gorrens et al. 2021 [45]	Larvae	Chicken feed; fiber-rich ingredients	Bacillota and Pseudomonadota	Escherichia, Klebsiella, Enterobacter, Enterococcus, Providencia and Morganella
Greenwood et al. 2021 [46]	Larvae	Grain-based feed; mixture of brewer’s spent grain and a plant-based sweetener; vegetable waste stream	Bacillota, Bacteroidota, Actinomycetota and Pseudomonadota	Morganella, Providencia, Lactobacillus, Enterococcus and Proteus.
Klammsteiner et al. 2021 [47]	Larvae	Chicken feed; food waste; oil wast	Pseudomonadota, Bacteroidota, Bacillota and Actinomycetota	Morganella, Providencia, Dysgonomonas and Lactobacillus
Li et al. 2021 [73]	Larvae	Food waste	Pseudomonadota, Bacillota and Bacteroidota	Ignatzschineria, Providencia, Proteus, Klebsiella and Vagococcus
Liu et al. 2021 [67]	Larvae	Soya meal; oxytetracycline bacterial residue	Pseudomonadota, Bacillota and Actinomycetota	Providencia, Enterococcus and Ignatzschineria
Osimani et al. 2021 [48]	Larvae	Mixtures of coffee by-products and microalgae	Bacillota and Pseudomonadota	Paenibacillus, Lysinibacillus, Solibacillus, Brevundominas, Morganella, Enterococcus and Paracoccus
Shumo et al. 2021 [49]	Larvae	Chicken manure; kitchen waste	Pseudomonadota, Actinomycetota and Bacillota	Providencia, Morganella, Brevibacterium, Staphylococcus and Bordetella
Yang et al. 2021 [53]	Larvae	Gainesville diet; starvation	Actinomycetota, Pseudomonadota, Bacillota, Euryarchaeota, Bacteroidota	Actinomyces, Campylobacter, Microbacterium, Enterococcus and Enterobacter
Tanga et al. 2021 [50]	Larvae	Brewers’ spent grains; kitchen food waste; poultry manure; rabbit manure	Bacteroidota, Pseudomonadota and Bacillota	Dysgonomonas, Parabacteroides, Bacteroides, Flavobacterium, Campylobacter, Lachnoclostridium, Erysipelothrix and Enterococcus
Zhang et al. 2021 [68]	Larvae	Chicken manure	Bacillota and Actinomycetota	Unclassified_f_peptostreptococcaceae, Enterococcus and Turicibacter
Zhineng et al. 2021 [51]	Larvae	Wheat bran + soybean powder; food waste	Pseudomonadota, Bacillota, Bacteroidota and Actinomycetota	Enterococcus, Acinetobacter, Providencia, Enterobacter and Myroides
Soomro et al. 2021 [56]	Larvae	Corn flour + bran	Pseudomonadota, Bacillota, Bacteroidota and Actinomycetes	Morganella, Sedimentibacter, Dysgonomonas, Enterococcus and Providencia
Cifuentes et al. 2022 [79]	Larvae	Chicken feed	Pseudomonadota and Bacillota	Stenoytophomonas, Pseudomonas, Alcaligenes, Proteus, Providencia, Morganella, Serratia, Klebsiella, Enterobacter, Brucella, Bacillus, Enterococcus, Mammaliicoccus and Lysinibacillus
Gorrens et al. 2022 [52]	Larvae	Chiken feed; mixture of vegetable coproducts; pig feed; pig feed + wheat bran	Bacillota and Pseudomonadota	Lactiplantibacillus, Weissella, Enterococcus, Morganella, Providencia, Lactobacillus, Corynebacterium, Proteus, Oceanobacillus, Cerasibacillus, Enterobacter and Bacillus
Pei at al. 2022 [69]	Larvae	Wheat bran; food waste + peanut shell powder	Bacillota	Bacillus, unclassified_f_Caloramatoraceae, Cerasibacillus and Gracilibacillus
Querejeta et al. 2022 [70]	Eggs, larvae, prepupae, pupae, adults	Gainesville diet	Actinomycetota, Bacillota, Pseudomonadota and Bacteroidota	Acetobacter, Pseudomonas, Delftia, Dysgonomonas, Acinetobacter, Providencia, Myroides, Alcaligenes, Corynebacterium and Cutibacteium
Zhang et al. 2022 [72]	Larvae	Pig manure	Actinomycetota, Pseudomonadota and Bacteroidota	Enterococcus, Providencia, Dysgonomonas, Koukoulia, Pseudomonas, Sphingobacterium
Yu et al. 2023 [71]	Larvae	Artificial diet for Drosophila melanogaster	Bacteroidota, Campilobacterota, Bacillota, Pseudomonadota, Actinomycetota	Dysgonomonas, Campylobacter, Enterococcus, Actinomyces, Pseudomonas, Klebsiella and Providencia

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