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Table 5 Relative abundance of genera belonging to the core microbiota from control group at weaning from each group at D7 and D21

From: Ceftiofur treatment of sows results in long-term alterations in the nasal microbiota of the offspring that can be ameliorated by inoculation of nasal colonizers

Taxa

D7

D21

Control

TS

TP

Control

TS

TP

p__Proteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Glaesserella

0.0183

0.0601

0.0017

0.2754

0.1094

0.1490

p__Bacteroidetes;o__Flavobacteriales;f__[Weeksellaceae];g__Bergeyella

0.0000

0.0250

0.0000

0.1063

0.2005

0.0679

p__Proteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Enhydrobacter

0.1252

0.0013

0.0010

0.0876

0.1265

0.1616

p__Firmicutes;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus

0.0243

0.0249

0.0145

0.0320

0.0746

0.0368

p__Proteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Caulobacter

0.1005

0.0773

0.1593

0.0761

0.0801

0.1341

p__Proteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella

0.3518

0.0500

0.0476

0.0673

0.0298

0.0190

p__Proteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium

0.0495

0.0307

0.0705

0.0402

0.0718

0.0785

p__Firmicutes;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus

0.0174

0.0530

0.1236

0.0022

0.0095

0.0052

p__Actinobacteria;o__Actinomycetales;f__Micrococcaceae;g__Rothia

0.0069

0.0232

0.0100

0.0173

0.0026

0.0058

p__Bacteroidetes;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides

0.0008

0.0087

0.0214

0.0025

0.0018

0.0044

p__Proteobacteria;o__Rhizobiales;__;__

0.0495

0.0307

0.0705

0.0003

0.0009

0.0017

p__Bacteroidetes;o__Bacteroidales;f__Prevotellaceae;g__Prevotella

0.0008

0.0090

0.0064

0.0012

0.0015

0.0010

p__Firmicutes;o__Clostridiales;f__Ruminococcaceae;g__

0.0008

0.0046

0.0010

0.0020

0.0019

0.0009

p__Proteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter

0.0151

0.0996

0.0816

0.0018

0.0048

0.0151

p__Proteobacteria;o__Rhizobiales;f__Bradyrhizobiaceae;g__Bradyrhizobium

0.0064

0.0029

0.0078

0.0034

0.0035

0.0113

p__Proteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;g__Escherichia

0.0018

0.0104

0.0229

0.0055

0.0058

0.0071

p__Firmicutes;o__Clostridiales;f__Clostridiaceae;g__Clostridium

0.0025

0.0247

0.0047

0.0009

0.0014

0.0007

p__Proteobacteria;o__Burkholderiales;f__Comamonadaceae;g__Variovorax

0.0060

0.0047

0.0083

0.0029

0.0072

0.0017

p__Firmicutes;o__Clostridiales;f__;g__

0.0025

0.0247

0.0047

0.0020

0.0019

0.0009

p__Firmicutes;o__Turicibacterales;f__Turicibacteraceae;g__Turicibacter

0.0009

0.0049

0.0016

0.0013

0.0002

0.0015

  1. Control, non-treated piglets born to non-treated sows; TS, piglets born to treated sows; TP, piglets treated with ceftiofur born to non-treated sows