Unveiling the microbiome during post-partum uterine infection: a deep shotgun sequencing approach to characterize the dairy cow uterine microbiome

Table 1 Natural log fold change of abundance data collected from ANCOM-BC for MET vs. CT for top 12 most abundant genera

Genera	Natural log fold change of MET vs. CT^a	MET (Combined Treatment) mean percent relative abundance^b
Bacteroides	0.20	1.03
Clostridium	0.09	0.61
Dietzia	− 0.19	0.61
Escherichia	–	0.63
Fusobacterium	0.20	1.03
Histophilus	–	0.63
Microbacterium	− 0.16	0.67
Phocaeicola	0.16	0.64
Porphyromonas	0.19	0.89
Prevotella	0.17	0.79
Streptococcus	0.22	0.70
Trueperella	–	0.56

^aNatural log fold change of abundance for MET (regardless of antimicrobial treatment) vs. CT for top 12 most abundant genera
^bMean of percent relative abundance for top 12 genera for all MET samples, regardless of antimicrobial treatment (n = 33)
“–” Indicates genera with non-significant natural log fold change values for MET vs CT (p adjusted > 0.05)

ISSN: 2524-4671