Target gene copy number/rrnS gene copy number (x 10− 6) ± SEM2 | ||||||||
---|---|---|---|---|---|---|---|---|
Diet1 | Litter | Cecum | ||||||
BMD | 0% | 12.5% | 25% | BMD | 0% | 12.5% | 25% | |
Gene Target | Â | Â | Â | Â | Â | Â | Â | Â |
strA | 154026 ± 80294 | 288021 ± 127212 | 448690 ± 193791 | 199109 ± 68265 | 357 ± 231 | 5445 ± 3377 | 28210 ± 26643 | 2219 ± 1682 |
strB | 24579 ± 12467 | 45758 ± 20377 | 78221 ± 40171 | 31973 ± 12834 | 79.9 ± 49.24 | 1432 ± 870 | 6896 ± 6428 | 531 ± 373 |
tetA | 81110 ± 25549 | 219589 ± 88024 | 153168 ± 65460 | 104049 ± 22118 | 2058 ± 411 | 5984 ± 1733 | 1724 ± 419 | 2005 ± 935 |
blaCMY-2 | 24927 ± 20655 | 7491 ± 2646 | 44986 ± 20659 | 10421 ± 4924 | 32.6 ± 16.96 | 11.2 ± 4.12 | 38.6 ± 11.17 | 14.1 ± 6.59 |
sul1 | 3499 ± 2059 | 6692 ± 3563 | 3410 ± 2362 | 5248 ± 1416 | 37.1 ± 31.87 | 347 ± 313 | 49.5 ± 38.68 | 19.0 ± 11.79 |
sul2 | 20400 ± 11986 | 12249 ± 4469 | 26566 ± 10196 | 23327 ± 9266 | 5.63 ± 2.70 | 564 ± 555 | 83.2 ± 47.23 | 3.74 ± 3.20 |
ermF | 0.228 ± 0.121 | 0.128 ± 0.031 | 0.146 ± 0.039 | 0.128 ± 0.022 | BDL | BDL | BDL | BDL |
mphE | 0.228 ± 0.12 | 0.140 ± 0.037 | 1.10 ± 0.957 | 0.128 ± 0.022 | BDL | BDL | BDL | BDL |
Int1 | 23599 ± 11567 | 21405 ± 6644 | 22718 ± 8062 | 25089 ± 8320 | 92.64 ± 71.20 | 2725.±2595 | 373 ± 177 | 57.1 ± 31.22 |
blaOXA-20 | 0.697 ± 0.540 | 336 ± 335 | 0.801 ± 0.535 | 0.709 ± 0.264 | 0.501 ± 0.123 | 0.384 ± 0.084 | 1.72 ± 0.926 | 0.351 ± 0.073 |
msrE | 0.228 ± 0.121 | 0.464 ± 0.235 | 8.5 ± 8.35 | 0.141 ± 0.025 | BDL | BDL | BDL | BDL |
ermB | 5310 ± 2697 | 16431 ± 6966 | 6944 ± 2711 | 2783 ± 816 | 191787 ± 29057 | 104689 ± 22512* | 93115 ± 15602* | 64585 ± 9922** |
aadA | 1578 ± 974 | 2705 ± 1465 | 1732 ± 0.52 | 2498 ± 617 | 27.2 ± 23.36 | 323 ± 291 | 42.8 ± 28.77 | 16.7 ± 10.25 |
bcrR | 15954 ± 6021 | 4660 ± 1173 | 8188 ± 3583 | 6015 ± 1485 | 11465 ± 3494 | 2385 ± 893* | 2004 ± 1051** | 1218 ± 648** |