Hillyard SD, Podrabsky J, van Breukelen F. Desert Environments. In: Riesch R, Tobler M, Plath M, editors. Extremophile fishes-ecology evolution and physiology of teleosts in extreme environments. New York: Springer; 2015. p. 59–84.
Google Scholar
Heuton M, Ayala L, Burg C, Dayton K, McKenna K, Morante A, et al. Paradoxical anaerobism in desert pupfish. J Exp Biol. 2015;218:3739–45.
Article
Google Scholar
Heuton M, Ayala L, Morante A, Dayton K, Jones AC, Hunt JR, et al. Oxygen consumption of desert pupfish at ecologically relevant temperatures suggests a significant role for anaerobic metabolism. J Comp Physiol B Biochem Syst Environ Physiol. 2018;188:821–30.
Article
CAS
Google Scholar
Lemasters JJ, Holmuhamedov E. Voltage-dependent anion channel (VDAC) as mitochondrial governator - thinking outside the box. Biochim Biophys Acta - Mol Basis Dis. 1762;2006:181–90.
Google Scholar
Lemasters JJ, Holmuhamedov EL, Czerny C, Zhong Z, Maldonado EN. Regulation of mitochondrial function by voltage dependent anion channels in ethanol metabolism and the Warburg effect. Biochim Biophys Acta Biomembr. 1818;2012:1536–44.
Google Scholar
Holmuhamedov EL, Czerny C, Beeson CC, Lemasters JJ. Ethanol suppresses ureagenesis in rat hepatocytes. J Biol Chem. 2012;287:7692–700.
Article
CAS
Google Scholar
Hochachka P, Somero G. Biochemical adaptation, mechanisms and process in physiological evolution. New York: Oxford University Press; 2002.
Google Scholar
Shoubridge EA, Hochachka PW. Ethanol: novel end product of vertebrate anaerobic metabolism. Science. 1980;209:308–9.
Article
CAS
Google Scholar
Holmuhamedov E, Lemasters JJ. Ethanol exposure decreases mitochondrial outer membrane permeability in cultured rat hepatocytes. Arch Biochem Biophys. 2009;481:226–33.
Article
CAS
Google Scholar
Tarnecki AM, Burgos FA, Ray CL, Arias CR. Fish intestinal microbiome: diversity and symbiosis unravelled by metagenomics. J Appl Microbiol. 2017;123:2–17.
Article
CAS
Google Scholar
Higuera-Llantén S, Vásquez-Ponce F, Barrientos-Espinoza B, Mardones FO, Marshall SH, Olivares-Pacheco J. Extended antibiotic treatment in salmon farms select multiresistant gut bacteria with a high prevalence of antibiotic resistance genes. PLoS One. 2018;13(9):e0203641.
Article
Google Scholar
Sáenz JS, Marques TV, Barone RSC, Cyrino JEP, Kublik S, Nesme J, et al. Oral administration of antibiotics increased the potential mobility of bacterial resistance genes in the gut of the fish Piaractus mesopotamicus. Microbiome. 2019;7:24.
Article
Google Scholar
Loch TP, Faisal M. Emerging flavobacterial infections in fish: a review. J Adv Res. 2015;6:283–300.
Article
CAS
Google Scholar
Henríquez-Núñez H, Evrard O, Kronvall G, Avendaño-Herrera R. Antimicrobial susceptibility and plasmid profiles of Flavobacterium psychrophilum strains isolated in Chile. Aquaculture. 2012;354–355:38–44.
Article
Google Scholar
Foster G, Ross HM, Naylor RD, Collins MD, Ramos CP, Garayzabal FF, et al. Cetobacterium ceti gen. Nov., sp. nov., a new gram-negative obligate anaerobe from sea mammals. Lett Appl Microbiol. 1995;21:202–6.
Article
CAS
Google Scholar
Ray C, Bujan N, Tarnecki A, Davis DA, Browdy C, Arias CR. Analysis of the gut microbiome of Nile tilapia Oreochromis niloticus L. fed diets supplemented with Previda® and Saponin. J Fish. 2017;11(2):36–45.
CAS
Google Scholar
van Kessel MAHJ, Dutilh BE, Neveling K, Kwint MP, Veltman JA, Flik G, et al. Pyrosequencing of 16S rRNA gene amplicons to study the microbiota in the gastrointestinal tract of carp (Cyprinus carpio L.). AMB Express. 2011;1:1–9.
Article
Google Scholar
Ramírez C, Coronado J, Silva A, Romero J. Cetobacterium is a major component of the microbiome of giant Amazonian fish (Arapaima gigas) in Ecuador. Animals. 2018;8(11):189.
Article
Google Scholar
Larsen AM, Mohammed HH, Arias CR. Characterization of the gut microbiota of three commercially valuable warmwater fish species. J Appl Microbiol. 2014;116:1396–404.
Article
CAS
Google Scholar
Sugita H, Miyajima C, Deguchi Y. The vitamin B12-producing ability of the intestinal microflora of freshwater fish. Aquaculture. 1991;92(C):267–76.
Article
CAS
Google Scholar
Schink B, Phelps TJ, Eichler B, Zeikus JG. Comparison of ethanol degradation pathways in anoxic freshwater environments. J Gen Microbiol. 1985;131:651–60.
CAS
Google Scholar
Li F, Hinderberger J, Seedorf H, Zhang J, Buckel W, Thauer RK. Coupled ferredoxin and crotonyl coenzyme a (CoA) reduction with NADH catalyzed by the butyryl-CoA dehydrogenase/Etf complex from Clostridium kluyveri. J Bacteriol. 2008;190:843–50.
Article
CAS
Google Scholar
Sackett JD, Huerta DC, Kruger BR, Hamilton-Brehm SD, Moser DP. A comparative study of prokaryotic diversity and physicochemical characteristics of devils hole and the ash meadows fish conservation facility, a constructed analog. PLoS One. 2018;13(3):e0194404.
Article
Google Scholar
Merrifield D, Ringo E. Aquaculture nutrition: gut health, probiotics and prebiotics. Chichester: Wiley-Blackwell. 2014.
Feuerbacher O, Bonar SA, Barrett PJ. Enhancing hatch rate and survival in laboratory-reared hybrid devils hole pupfish through application of antibiotics to eggs and larvae. N Am J Aquacult. 2017;79:106–14.
Article
Google Scholar
Martin AP. Genetic analysis of Cyprinodon diabolis: hybridization with C. nevadensis in the point of Rocks Refuge. Report submitted to the Nevada Division of Wildlife and the USFWS. 2005.
Burg GC, Johnson J, Spataro S, O’Keefe A, Urbina N, Puentedura G, et al. Care and propagation of captive pupfish from the genus Cyprinodon: insight into conservation. Environ Biol Fish. 2019;102:1015–24.
Article
Google Scholar
Mefferd CC, Bhute SS, Phan JR, Villarama JV, Do DM, Alarcia S, et al. A high-fat/high-protein, Atkins-type diet exacerbates Clostridioides (Clostridium) difficile infection in mice, whereas a high-carbohydrate diet protects. mSystems. 2020;5:e00765–19.
Article
Google Scholar
Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, et al. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 2012;6:1621–4.
Article
CAS
Google Scholar
Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019;37:852–7.
Article
CAS
Google Scholar
The R Core team. R : a language and environment for statistical Computing. 2013;1.
Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP. DADA2: high-resolution sample inference from Illumina amplicon data. Nat Methods. 2016;13:581–3.
Article
CAS
Google Scholar
Clarke KR. Non-parametric multivariate analyses of changes in community structure. Aust J Ecol. 1993;18:117–43.
Article
Google Scholar
Mandal S, Van Treuren W, White RA, Eggesbø M, Knight R, Peddada SD. Analysis of composition of microbiomes: a novel method for studying microbial composition. Microb Ecol Heal Dis. 2015;26:27663.
Google Scholar
Langille MGI, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotechnol. 2013;31:814–21.
Article
CAS
Google Scholar